[med-svn] [Git][med-team/ksw2][master] check and use operating system libgaba

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / ksw2


Commits:
80e41cf5 by Etienne Mollier at 2020-07-11T12:43:44+02:00
check and use operating system libgaba

build dependency to an hypothetical libgaba-dev is not ready yet, but
could be in a the future.

- - - - -


1 changed file:

- debian/patches/autoconf.patch


Changes:

=====================================
debian/patches/autoconf.patch
=====================================
@@ -26,7 +26,7 @@ Description: Provide automake build system to get proper library packaging
 +
 --- /dev/null
 +++ ksw2/configure.ac
-@@ -0,0 +1,66 @@
+@@ -0,0 +1,67 @@
 +#                                               -*- Autoconf -*-
 +# Process this file with autoconf to produce a configure script.
 +
@@ -81,6 +81,7 @@ Description: Provide automake build system to get proper library packaging
 +AC_HEADER_STDC
 +AC_CHECK_HEADERS([stdlib.h])
 +AC_CHECK_HEADERS([parasail.h],[AC_DEFINE([HAVE_PARASAIL], [1], [Use parasail])])
++AC_CHECK_HEADERS([gaba.h],[AC_DEFINE([HAVE_GABA], [1], [Use libgaba])])
 +
 +AC_PROG_MAKE_SET
 +
@@ -171,7 +172,12 @@ Description: Provide automake build system to get proper library packaging
 -ksw2_gg2_sse.o: ksw2.h
 --- ksw2.orig/cli.c
 +++ ksw2/cli.c
-@@ -11,7 +11,7 @@
+@@ -7,11 +7,11 @@
+ KSEQ_INIT(gzFile, gzread)
+ 
+ #ifdef HAVE_GABA
+-#include "gaba.h"
++#include <gaba.h>
  #endif
  
  #ifdef HAVE_PARASAIL



View it on GitLab: https://salsa.debian.org/med-team/ksw2/-/commit/80e41cf545274c5b371d3ff41c07c7d35326fbb5

-- 
View it on GitLab: https://salsa.debian.org/med-team/ksw2/-/commit/80e41cf545274c5b371d3ff41c07c7d35326fbb5
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