[med-svn] [Git][med-team/fieldbioinformatics][master] 2 commits: Add Dependencies

[Malihe Asemani]

Malihe Asemani pushed to branch master at Debian Med / fieldbioinformatics


Commits:
d4d4d360 by Malihe Asemani at 2020-07-13T21:46:29+04:30
Add Dependencies

- - - - -
82b0e723 by Malihe Asemani at 2020-07-13T21:49:56+04:30
TODO: Resolving deps into several NOT packaged sources

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,5 +1,6 @@
 fieldbioinformatics (1.1.3-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #963530)
+  * TODO resolve deps into artic-porechop, longshot, and nomkl
 
  -- Malihe Asemani <ml.asemani at gmail.com>  Tue, 16 Jun 2020 22:25:27 +0430


=====================================
debian/control
=====================================
@@ -26,7 +26,15 @@ Depends: ${python3:Depends},
          python3-requests,
          python3-seaborn,
          python3-tqdm,
-         nanopolish|medaka
+         nanopolish|medaka,
+         bcftools,
+         bwa,
+         minimap2,
+         muscle,
+         python3-pytest,
+         python3-pyvcf,
+         samtools
+
 Description: pipeline with virus identification with Nanopore sequencer
  This is the ARTIC bioinformatics pipeline for working with virus sequencing
  data, sequenced with nanopore. It implements a complete bioinformatics



View it on GitLab: https://salsa.debian.org/med-team/fieldbioinformatics/-/compare/8557ec7acb1c385aa80d1a97aecbf96747d819a0...82b0e723ab1978fe14b8bf746d853a7787870aa4

-- 
View it on GitLab: https://salsa.debian.org/med-team/fieldbioinformatics/-/compare/8557ec7acb1c385aa80d1a97aecbf96747d819a0...82b0e723ab1978fe14b8bf746d853a7787870aa4
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