[med-svn] [Git][med-team/dwgsim][master] 5 commits: Add autopkgtest

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / dwgsim


Commits:
703d0fbe by Nilesh Patra at 2020-07-14T16:42:17+05:30
Add autopkgtest

- - - - -
4e58ee0a by Nilesh Patra at 2020-07-14T16:46:44+05:30
Update metadata

- - - - -
e32dc2ba by Nilesh Patra at 2020-07-14T16:48:30+05:30
Remove travis-ci build status

- - - - -
191be414 by Nilesh Patra at 2020-07-14T16:49:28+05:30
compat version: 13, Rules-Requires-Root: no, standards-version: 4.5.0

- - - - -
3f86912b by Nilesh Patra at 2020-07-14T16:52:50+05:30
Fix spellings

- - - - -


7 changed files:

- debian/control
- + debian/patches/remove-travis-ci-link.patch
- debian/patches/series
- debian/rules
- + debian/tests/control
- + debian/tests/run-unit-test
- debian/upstream/metadata


Changes:

=====================================
debian/control
=====================================
@@ -3,14 +3,15 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Kevin Murray <spam at kdmurray.id.au>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                samtools (>= 1.7-2),
                markdown,
                zlib1g-dev
-Standards-Version: 4.4.1
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/dwgsim
 Vcs-Git: https://salsa.debian.org/med-team/dwgsim.git
 Homepage: https://github.com/nh13/DWGSIM/
+Rules-Requires-Root: no
 
 Package: dwgsim
 Architecture: any


=====================================
debian/patches/remove-travis-ci-link.patch
=====================================
@@ -0,0 +1,11 @@
+Author: Nilesh Patra <npatra974 at gmail.com>
+Description: Remove Travis build status link - this is of no real use to end users and instead causes a privacy breach - hence removing this.
+Last Changed: Tue July 14 2020
+--- a/README.md
++++ b/README.md
+@@ -1,5 +1,3 @@
+-[![Build Status](https://travis-ci.org/nh13/DWGSIM.svg?branch=master)](https://travis-ci.org/nh13/DWGSIM)
+-
+ Welcome to DWGSIM.
+ 
+ Please see the file LICENSE for details.


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 0001-Debian-ise-makefile.patch
 2to3.patch
+remove-travis-ci-link.patch


=====================================
debian/rules
=====================================
@@ -10,6 +10,8 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 	dh $@
 
 override_dh_auto_build:
+	sed -i 's/occour/occur/' src/dwgsim_opt.c
+	sed -i 's/occour/occur/' debian/dwgsim.1
 	dh_auto_build
 	markdown README.md > README.html
 


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,4 @@
+Tests: run-unit-test
+Depends: @, samtools
+Restrictions: allow-stderr
+


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,29 @@
+#!/bin/bash
+set -e
+
+pkg=dwgsim
+CUR_DIR=`pwd`
+
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp ${CUR_DIR}/testdata/* -a "${AUTOPKGTEST_TMP}"
+cp /usr/share/doc/samtools/examples/* -a "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+gunzip -r *
+
+echo "BEGIN TEST"
+mkdir -p tmp
+dwgsim -z 13 -N 10000 ex1.fa tmp/ex1.test
+
+echo "TAKE DIFF FOR CORRECT OUTPUT"
+for FILE in $(ls -1 ex1.test*)
+do 
+	diff -q ${FILE} tmp/${FILE}
+done
+rm -rf tmp
+echo "PASS"
+


=====================================
debian/upstream/metadata
=====================================
@@ -7,4 +7,10 @@ Registry:
   Entry: SCR_002342
 - Name: conda:bioconda
   Entry: dwgsim
+---
+Archive: GitHub
 Bug-Database: https://github.com/nh13/DWGSIM/issues
+Bug-Submit: https://github.com/nh13/DWGSIM/issues/new
+Changelog: https://github.com/nh13/DWGSIM/tags
+Repository: https://github.com/nh13/DWGSIM.git
+Repository-Browse: https://github.com/nh13/DWGSIM



View it on GitLab: https://salsa.debian.org/med-team/dwgsim/-/compare/60ccf2b271fb2822a89006ffb81605293ccfc8a7...3f86912b72ecc715ade06f0c259a8e7054982569

-- 
View it on GitLab: https://salsa.debian.org/med-team/dwgsim/-/compare/60ccf2b271fb2822a89006ffb81605293ccfc8a7...3f86912b72ecc715ade06f0c259a8e7054982569
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