[med-svn] [Git][med-team/libpll][master] 6 commits: Add 2to3.patch
Nilesh Patra
gitlab at salsa.debian.org
Wed Jul 15 22:12:30 BST 2020
Nilesh Patra pushed to branch master at Debian Med / libpll
Commits:
67d90d1f by Nilesh Patra at 2020-07-16T02:13:20+05:30
Add 2to3.patch
- - - - -
b42cec2e by Nilesh Patra at 2020-07-16T02:14:31+05:30
Add autopkgtest
- - - - -
f98ae461 by Nilesh Patra at 2020-07-16T02:15:24+05:30
Drop compat, switch to debhelper-compat 13
- - - - -
3665502f by Nilesh Patra at 2020-07-16T02:38:42+05:30
Install manpage
- - - - -
b0ac5783 by Nilesh Patra at 2020-07-16T02:39:12+05:30
Do not install examples, spelling fix
- - - - -
523a624f by Nilesh Patra at 2020-07-16T02:40:32+05:30
standards version: 4.5.0, Rules-Requires-Root: no
- - - - -
26 changed files:
- − debian/compat
- debian/control
- + debian/libpll-dev.manpages
- + debian/patches/2to3.patch
- + debian/patches/series
- debian/rules
- + debian/tests/README
- + debian/tests/control
- + debian/tests/run-unit-test
- + debian/tests/testdata/1000.tree
- + debian/tests/testdata/1000x5.dna.fas
- + debian/tests/testdata/200.fas
- + debian/tests/testdata/200.tree
- + debian/tests/testdata/2000.fas
- + debian/tests/testdata/2000.tree
- + debian/tests/testdata/246x4465.fas
- + debian/tests/testdata/246x4465.tree
- + debian/tests/testdata/medium.fas
- + debian/tests/testdata/medium.tree
- + debian/tests/testdata/ribosomal_l5_pf00673.fas
- + debian/tests/testdata/ribosomal_l5_pf00673.tree
- + debian/tests/testdata/small.fas
- + debian/tests/testdata/small.rooted.tip.tree
- + debian/tests/testdata/small.rooted.tree
- + debian/tests/testdata/small.tree
- + debian/tests/testdata/worms16s.fas
Changes:
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -3,15 +3,16 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
d-shlibs,
bison,
flex,
autoconf-archive
-Standards-Version: 4.1.4
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/libpll
Vcs-Git: https://salsa.debian.org/med-team/libpll.git
Homepage: http://www.libpll.org/
+Rules-Requires-Root: no
Package: libpll0
Architecture: any
=====================================
debian/libpll-dev.manpages
=====================================
@@ -0,0 +1 @@
+man/libpll.3
=====================================
debian/patches/2to3.patch
=====================================
@@ -0,0 +1,83 @@
+Author: Nilesh Patra <npatra974 at gmail.com>
+Description: Adapt to python3 syntax
+Last-Changed: Thu July 16, 2020
+--- a/test/runtest.py
++++ b/test/runtest.py
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python
++#!/usr/bin/python3
+ #
+ # Copyright (C) 2015 Diego Darriba
+ #
+@@ -213,7 +213,7 @@
+ # Check the output
+ skipOutput = diffOutput("out/skip.out")
+
+- if skipOutput == "":
++ if skipOutput == b"":
+ fancyprint("orange", "\b\b\b\b\b")
+ testSKIP()
+ test_ok = -1
+@@ -221,7 +221,7 @@
+ else:
+ output = diffOutput("out/"+filename+".out")
+
+- if output != "":
++ if output != b"":
+ fancyprint("red", " Test failed\n")
+ call(["mv", "tmp", "result/testfail_"+typestr+"_"+filename+"_"+nowstr])
+ call(["mv", "tmperr", "result/testfail_"+typestr+"_"+filename+"_"+nowstr+".err"])
+@@ -295,13 +295,6 @@
+ else:
+ attribstr += " CPU"
+ typestr += "C"
+-
+- fancyprint("bluebg", "{:<80}"
+- .format(attribstr.rjust(40 + len(attribstr)/2)), True)
+-
+- # Process each test case
+- fancyprint("yellow", "{:<7} {:<8} {:<18} {:>11} Result {:<17}"
+- .format(" ","Start", "File", "Time", "Memcheck"),True)
+
+ for filename in files:
+ cur_test = cur_test+1
+@@ -338,14 +331,14 @@
+ # Check the output
+ skipOutput = diffOutput("out/skip.out")
+
+- if skipOutput == "":
++ if skipOutput == b"":
+ testSKIP()
+ print
+ result_ok = 1
+ memory_ok = 1
+ else:
+ output = diffOutput("out/"+filename+".out")
+- if output == "":
++ if output == b"":
+ result_ok = 1
+ testOK()
+ os.remove("tmp")
+@@ -363,6 +356,7 @@
+ # Check memory leaks
+ p3 = Popen(["./eval_valgrind.sh", "obj/"+filename, nowstr, attrib], stdout=PIPE)
+ output = p3.communicate()[0]
++ output = output.decode("utf-8")
+ deflost = int(output.split(' ')[0])
+ indlost = int(output.split(' ')[1])
+ reachable = int(output.split(' ')[2])
+@@ -431,7 +425,7 @@
+ success_count = runValidation(files)
+
+ # Final summary
+- print
++ print()
+ global_run_time = int(time.time()*1000) - global_start_time
+ fancyprint("-", "Tests done... it took %d ms" % global_run_time, True)
+ fancyprint("green", " %d/%d (%3.2f%%) OK"
+@@ -440,4 +434,4 @@
+ fancyprint("red", " %d/%d (%3.2f%%) FAIL"
+ % (num_tests-success_count, num_tests, 100 - 100*success_count/num_tests), True)
+
+- print
++ print()
=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+2to3.patch
=====================================
debian/rules
=====================================
@@ -26,3 +26,12 @@ override_dh_install:
--override s/ld-kfreebsd-x86-64-1-dev// \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
+
+override_dh_installman:
+ sed -i 's/conjuction/conjunction/' man/libpll.3
+ dh_installman
+
+override_dh_missing:
+ find . -type f \( -name "*.la" -o -name "libpll.3" \) | xargs rm -rf
+ find . -name examples | xargs rm -rf
+ dh_missing
=====================================
debian/tests/README
=====================================
@@ -0,0 +1,5 @@
+Tests for libpll
+=================
+
+The data for tests has been referenced from:
+ https://raw.githubusercontent.com/xflouris/assets/master/libpll
=====================================
debian/tests/control
=====================================
@@ -0,0 +1,4 @@
+Tests: run-unit-test
+Depends: @, python3-all, build-essential
+Restrictions: allow-stderr
+
=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,27 @@
+#!/bin/bash
+set -e
+
+pkg=libpll-dev
+CUR_DIR=`pwd`
+
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+ AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+ trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp ${CUR_DIR}/test/* -a "${AUTOPKGTEST_TMP}"
+cp ${CUR_DIR}/debian/tests/testdata -a "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+ls
+
+sed -i 's/\-std=c99/\-std=c99 \-I\/usr\/include\/libpll/' Makefile
+sed -i 43d Makefile
+sed -i 49d Makefile
+sed -i 's/env python/python3/' runtest.py
+
+echo 'Begin testing ...'
+make
+./runtest.py
+echo 'PASS'
+
=====================================
debian/tests/testdata/1000.tree
=====================================
@@ -0,0 +1 @@
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=====================================
debian/tests/testdata/1000x5.dna.fas
=====================================
@@ -0,0 +1,2000 @@
+>t1
+HCHGG
+>t2
+CYSGD
+>t3
+-GHCT
+>t4
+TSTCV
+>t5
+MAAAG
+>t6
+CA--Y
+>t7
+AWTHT
+>t8
+C--R-
+>t9
+ACCKA
+>t10
+TCMTG
+>t11
+MTATT
+>t12
+GMRGR
+>t13
+T-CBW
+>t14
+TRCYD
+>t15
+WGYST
+>t16
+AATSA
+>t17
+GAGTM
+>t18
+MMCHH
+>t19
+-GTSV
+>t20
+CCMAH
+>t21
+C--AW
+>t22
+VR-KC
+>t23
+DBGBH
+>t24
+ATDWH
+>t25
+RATTA
+>t26
+MTGAG
+>t27
+CYMCT
+>t28
+SGMCA
+>t29
+-TVBK
+>t30
+V-CW-
+>t31
+GHKTT
+>t32
+TSYWG
+>t33
+--GRA
+>t34
+SCR-T
+>t35
+CGD-T
+>t36
+CK-AA
+>t37
+CKHGW
+>t38
+HWGRG
+>t39
+ATWVW
+>t40
+KSGGG
+>t41
+GARBV
+>t42
+YGTGT
+>t43
+CMTDK
+>t44
+RGTGD
+>t45
+GYKAD
+>t46
+AYTYD
+>t47
+GRMGC
+>t48
+VRCMC
+>t49
+ATKTG
+>t50
+WVAKW
+>t51
+TBC-C
+>t52
+AKSGG
+>t53
+GCT-T
+>t54
+MMGYS
+>t55
+ATABW
+>t56
+TTTG-
+>t57
+AMDRV
+>t58
+TGKGG
+>t59
+TBA-H
+>t60
+GKSDH
+>t61
+DAWGC
+>t62
+DTGVW
+>t63
+GRH-G
+>t64
+ATGCT
+>t65
+YYGAK
+>t66
+TV-CH
+>t67
+AAAYC
+>t68
+CTYKH
+>t69
+RBBBW
+>t70
+BTASD
+>t71
+AMGTT
+>t72
+HGRTT
+>t73
+CRC-Y
+>t74
+CSRGG
+>t75
+AHW-C
+>t76
+YSKT-
+>t77
+YHGWR
+>t78
+MG-TV
+>t79
+ACVGG
+>t80
+W-TGC
+>t81
+KKRWH
+>t82
+C--AS
+>t83
+MDTGG
+>t84
+RD-KK
+>t85
+CSDC-
+>t86
+AGAGG
+>t87
+DTYYC
+>t88
+TVTB-
+>t89
+GTHAT
+>t90
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=====================================
debian/tests/testdata/200.fas
=====================================
=====================================
debian/tests/testdata/200.tree
=====================================
@@ -0,0 +1 @@
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=====================================
debian/tests/testdata/2000.fas
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/tests/testdata/2000.tree
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/tests/testdata/246x4465.fas
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/tests/testdata/246x4465.tree
=====================================
@@ -0,0 +1 @@
+(Taxon0003:0.03182521,(Taxon0005:0.02871992,(((Taxon0178:0.01509649,Taxon0179:0.01124047):0.02004448,(Taxon0002:0.05755704,Taxon0004:0.08358207):0.00000000):0.00000000,((Taxon0032:0.03815177,Taxon0031:0.03736845):0.00480170,(((Taxon0014:0.00025696,Taxon0013:0.00063970):0.00399082,(Taxon0027:0.00905667,Taxon0026:0.00866456):0.00000000):0.05097277,(((Taxon0128:0.00025309,Taxon0129:0.00019498):0.05861979,(Taxon0210:0.01878850,(Taxon0208:0.00192791,Taxon0209:0.00279775)0.423086:0.01618298):0.06396974):0.00000000,(((Taxon0043:0.06386641,(((Taxon0053:0.02272198,(Taxon0050:0.02278876,((Taxon0057:0.00107584,Taxon0056:0.00161792)0.999995:0.04292961,(Taxon0075:0.06863129,(Taxon0071:0.02066040,(Taxon0061:0.06270212,(Taxon0060:0.00016136,Taxon0062:0.00073530)0.717076:0.05904765):0.00000000):0.01661608):0.00000000)0.000000:0.00000000)0.000000:0.00000000):0.05594367,((Taxon0081:0.01348137,(Taxon0078:0.02656886,((Taxon0083:0.03107785,(Taxon0082:0.02436833,(Taxon0085:0.04812601,(Taxon0089:0.07173954,Taxon0088:0.06424935)0.999997:0.00000000)0.000000:0.00000000)0.000000:0.00925595)0.000000:0.00000000,(Taxon0084:0.02137999,(Taxon0086:0.03645785,(Taxon0080:0.00474238,(Taxon0079:0.00586686,Taxon0087:0.00566363)0.979661:0.00000000)0.000000:0.02299488)0.000000:0.00000000)0.999996:0.01022731)0.000000:0.00000000)0.000000:0.00000000):0.01828266,((Taxon0039:0.00615804,Taxon0052:0.00881110):0.00000000,(Taxon0054:0.01097449,((Taxon0041:0.00970248,Taxon0042:0.01102411):0.00324796,(Taxon0066:0.01900121,((((Taxon0037:0.00173662,Taxon0045:0.00188018)0.999945:0.01045247,Taxon0040:0.01210315):0.00000000,Taxon0070:0.00662972)0.999998:0.02633622,((Taxon0038:0.02116487,(Taxon0044:0.03636681,Taxon0065:0.02658465)0.964116:0.00000000)0.000000:0.00000000,Taxon0067:0.01587650)0.000000:0.00947604)0.999948:0.00000000)0.476103:0.00000000)0.999979:0.00000000)0.982194:0.00000000)0.000000:0.02212555):0.03237445)0.999925:0.00000000,(Taxon0059:0.02122012,(Taxon0068:0.03758525,Taxon0069:0.02924135):0.00000000)0.000000:0.02411509)0.999480:0.00474969):0.00001706,((((((((Taxon0073:0.02933308,Taxon0047:0.03618062)0.602406:0.00000000,Taxon0058:0.02372497)0.999164:0.00000000,Taxon0046:0.01622809):0.00000000,Taxon0035:0.01020320):0.00365326,(Taxon0063:0.02010936,((Taxon0034:0.02856628,((Taxon0036:0.03650016,Taxon0076:0.02856532):0.00000000,Taxon0064:0.01715009)0.000000:0.00216819)0.991567:0.00129672,(Taxon0048:0.00840312,((Taxon0077:0.00465233,Taxon0072:0.00256896)0.999697:0.00818028,(Taxon0049:0.01014694,Taxon0051:0.01364078)0.999527:0.00000000)0.000000:0.00000000)0.998950:0.01166610)0.725612:0.00000000):0.00000000)0.999923:0.01067655,((Taxon0074:0.01622887,Taxon0055:0.01430052):0.01135939,(Taxon0149:0.03727427,Taxon0148:0.03161815):0.00000000):0.00324333):0.00000000,((Taxon0145:0.00101221,Taxon0146:0.00325955)0.974740:0.03508004,Taxon0177:0.02863800):0.00000000):0.02071585,(((Taxon0151:0.00023498,Taxon0150:0.00380819):0.00012422,(Taxon0159:0.00028891,Taxon0158:0.00060758):0.00055102):0.05905255,(((((((Taxon0033:0.01003797,((Taxon0144:0.00105621,(Taxon0140:0.00081903,Taxon0139:0.00052630):0.00029032)0.000000:0.01744245,(((Taxon0138:0.00726265,Taxon0141:0.00000000)0.000000:0.00000000,Taxon0143:0.00398990)0.000000:0.03095469,Taxon0142:0.03221048)0.999945:0.00000000):0.00000000):0.04385459,(Taxon0155:0.07119887,(Taxon0156:0.01181302,Taxon0157:0.01312004)0.839976:0.05622716):0.00000000):0.01120817,(((Taxon0100:0.00363731,((Taxon0093:0.00809535,Taxon0099:0.00000000):0.01043167,Taxon0098:0.00727774)0.999997:0.00000000):0.03441078,((((Taxon0096:0.00816560,(Taxon0094:0.00863090,Taxon0095:0.00611061):0.00000000):0.00477860,((Taxon0102:0.01081713,Taxon0103:0.00877991):0.00000000,Taxon0092:0.00623990):0.00717771):0.01134061,(Taxon0101:0.03627366,(Taxon0097:0.06071182,Taxon0104:0.06419183):0.00000000):0.00000000)0.999994:0.03055306,Taxon0105:0.04257106)0.000000:0.00000000):0.02138036,((Taxon0020:0.04242541,((Taxon0015:0.05509765,Taxon0022:0.03817586):0.00000000,Taxon0021:0.01988167)0.998055:0.00541759):0.00134766,(((Taxon0019:0.00088086,Taxon0018:0.00091370):0.00000000,Taxon0016:0.00042258)0.995279:0.01600614,(Taxon0017:0.00176747,Taxon0023:0.00092709):0.01490253):0.01078607):0.00618034):0.00640409)0.999791:0.00000000,(((Taxon0212:0.00092493,(Taxon0211:0.00111106,Taxon0213:0.00045884)0.000000:0.00064667):0.00900955,((Taxon0214:0.00209811,Taxon0215:0.00194655):0.01662506,(((Taxon0217:0.00062776,Taxon0219:0.00071738)0.998810:0.01855834,Taxon0216:0.01819551)0.998624:0.00000000,(Taxon0221:0.02493607,(Taxon0220:0.03492611,(Taxon0218:0.04752308,Taxon0222:0.06134797)0.000000:0.00000000)0.999985:0.00000000)0.973256:0.00000000):0.00355041)0.929540:0.00000000):0.03475639,((Taxon0245:0.06999326,Taxon0246:0.05478584):0.00000000,((Taxon0223:0.00174615,((Taxon0229:0.00300168,(Taxon0227:0.00374043,Taxon0235:0.00324958)0.985094:0.00000000):0.00032538,(Taxon0228:0.00206098,Taxon0241:0.00221255)0.997966:0.00041313):0.00000000):0.04474679,(((Taxon0236:0.04937654,Taxon0237:0.05622139):0.0000000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=====================================
debian/tests/testdata/medium.fas
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/tests/testdata/medium.tree
=====================================
@@ -0,0 +1 @@
+((T039:0.001341762376,T052:0.001471697166)N1:0.002871114955,((((((((((T001:0.0007807558834,T003:0.0007807694333)N2:0.008567450323,T005:0.007250941349)N3:0.004860625265,(T002:0.1,T004:0.1)N4:0.01063495121)N5:0.008273017084,(T031:0.001025522147,T032:0.001786396278)N6:0.02156879908)N7:0.0004806405777,((T013:0.0003066999691,T014:0.0003172033679)N8:0.009393466645,(T026:0.470037411,T027:0.0009810302358)N9:0.01615660141)N10:0.004551708043)N11:0.002539966016,((T028:0.0006628444708,T029:0.0008986808458)N12:0.01371353973,T030:0.0108847896)N13:0.01287560413)N14:0.001666249054,((((((T047:0.0009155297697,T058:0.0006455809646)N15:0.0006132052235,T046:0.00220355969)N16:0.006311595119,T035:0.007140693162)N17:0.003299439266,(((T049:0.843279077,T051:0.843279077)N18:0.0007624000597,T048:0.0001737105931)N19:0.0003421233741,(T034:0.0008923036148,T036:0.000356526257)N20:0.0005961101022)N21:0.009760557355)N22:0.002049983913,T055:0.01340060186)N23:0.02878973503,((((((T010:2.15128596105,T012:0.0002904023096)N24:0.0005254617858,T009:9.8758081405)N25:0.008166253551,(T008:5.56588622405,T011:0.00119317101)N26:0.008204222007)N27:0.02988983416,(T006:0.0007485231262,T007:0.000812587608)N28:0.03889071747)N29:0.007609590781,(((((T015:0.0008165318913,T022:0.000431981146)N30:0.0004769893783,T021:0.001085709084)N31:0.001774775702,T020:0.001358788759)N32:0.01280267848,(((T018:0.0003422344301,T019:0.3192609205)N33:0.001220843764,T016:0.0003411695297)N34:0.001291538136,(T017:0.0001096023582,T023:0.000202312811)N35:0.002154375838)N36:0.0151691037)N37:0.04183493608,T033:0.04322072561)N38:0.009002119998)N39:0.002555539776,(T024:0.0002374132474,T025:7.44775990705)N40:0.04650077494)N41:0.04718690661)N42:0.002277275078)N43:0.01701523243,T043:0.007799672442)N44:0.0008166596368,T059:0.01361709756)N45:0.0005339748084,((((T053:0.00850761282,T057:0.01085022418)N46:0.0006054568817,T060:0.007606337218)N47:0.0004586798256,T050:0.009138514333)N48:0.001114089306,T056:0.007551202064)N49:0.002164105859)N50:0.002713432976,((((((T037:0.00130899253,T045:0.0002518498633)N51:0.0002472135965,T040:0.001002764472)N52:0.001634494342,T038:0.001810119453)N53:0.0001399118613,T044:0.0038639107)N54:0.002080633602,(T041:0.003380360892,T042:0.0003726586503)N55:0.00575219316)N56:0.0002673506368,T054:0.005790426188)N57:0.0002584691966)N58;
=====================================
debian/tests/testdata/ribosomal_l5_pf00673.fas
=====================================
@@ -0,0 +1,42 @@
+>RL5X_THETH
+PIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLN--PNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVT------TAETDEE----------ARALLELLGFPFR
+>RL5_THEMA
+PIGLKVTLRGARMYNFLYKLINIVLPKVRDFRGLD--PNSFDGRGNYSFGLSEQLVFPELNPDEVRRIQGMDITIVT------TAKTDQE----------ARRLLELFGMPFK
+>RL5_MYCCA
+AIGAKVTLRGKKMYDFLDKLINVALPRVRDFRGVS--KTSFDGFGNFYTGIKEQIIFPEVDHDKVIRLRGMDITIVT------SAKTNKE----------AFALLQKIGMPFE
+>RK5_CYAPA
+PIGVMVTLRGDYMYAFLDRLINLSLPRIRDFRGIT--AKSFDGRGNYNLGLKEQLIFPEVDYDGIEQIRGMDISIVT------TAKTDQE----------GLALLKSLGMPFA
+>RL5_MICLU
+PIGTHATLRGDRMWEFLDRLVTLPLPRIRDFRGLS--DRQFDGNGNYTFGLSEQTVFHEIDQDKIDRVRGMDITVVT------TAKNDDE----------GRALLKALGFPFK
+>RL5_BUCAK
+PIGCKVTLRGERMWEFFERLISIAVPRIRDFRGLS--AKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITT------TAKSDDE----------GRALLAAFNFPFR
+>RL5_MYCGE
+LIGCKVTLRNKKMWSFLEKLIYIALPRVRDFRGLS--LRSFDGKGNYTIGIKEQIIFPEIVYDDIKRIRGFDITIVT------STNKDSE----------ALALLRALKMPFV
+>RK5_EUGGR
+PVGMFLTLRSEKMYSFLDRLINLSLPRIRDFQGIN--KNCFDGSGNFSFGLSEQSMFPEINFDKMIKVQGLNITIVT------TAETNQE----------AFFLLKELGIPFR
+>RK5_ODOSI
+ELGLTVTLRGSKMYSFLTKLIFFTFAQIRDFRGLS--VRSFDKAGNYTLGLKEQLIFPEIDYDDVDQTQGFSITLVF------SSTAPKSRSKTMDRVLNGMVLFKFLRFPLN
+>RL5_SULAC
+PIGVKATLRRQAAVEFLKKVL-----PAVNFRLK---QSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYRTMKRKRKKA----SIPRRHRVTKEEAINFM
+>RL5_METVA
+PIGLKVTLRGKNAEEFLENAF-----VAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRS----HIPAKHLVKKEEAIEYI
+>RL5_METJA
+PIGLKVTLRGKKAEEFLKNAF-----EAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRA----KIPRRHRLTREEAIEFI
+>RL5_HALMA
+PIGAKVTLRDEMAEEFLQTAL-----PLAELATS-----QFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASR----SIPTKHRLNPADAVAFI
+>RL11_YEAST
+KIAVHVTVRGPKAEEILERGL-----KVKEYQLR---DRNFSATGNFGFGIDEHIDL-GIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKG----TVGNSHKTTKEDTVSWF
+>RL11_SCHPO
+KIACHVTVRGPKAEEILERGL-----KVKEYELK---KRNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRG----RVGYTHKINAEDTINWF
+>RL11_LEICH
+KIAVHCTVRGKKAEELLEKGL-----KVKEFELK---SYNFSDTGSFGFGIDEHIDL-GIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCS----RVGHSHHVTKEEAMKWF
+>RL11_DROME
+KIAVHCTVRGAKAEEILERGL-----KVREYELR---RENFSSTGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSG----TVGFQHRLTKEDAMKWF
+>RL11_HUMAN
+KIAVHCTVRGAKAEEILEKGL-----KVREYELR---KNNFSDTGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTG----CIGAKHRISKEEAMRWF
+>RL11_CHLRE
+KISCYVTVRGEKAYDLVKRGL-----AVKEFELI---RKNFSDTGNFGFGIQEHIDL-GLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKA----HVGVKHKVTKEDAIKWF
+>R111_ARATH
+KIACYVTVRGEKAMQLLESGL-----KVKEYELL---RRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKA----RVGIQHRVTKDDAMKWF
+>RL11_TETTH
+KMAVHVTIRGDKARDILTRGL-----KVKEMELR---KKNFSNTGNFGFGIQEHIDL-GMKYDPSTGIFGMDFYVVLERPGTRVARRRRATS----RVGNNQMISKEECINWF
=====================================
debian/tests/testdata/ribosomal_l5_pf00673.tree
=====================================
@@ -0,0 +1,9 @@
+(((((((((((RL11_HUMAN:0.1551800,RL11_DROME:0.0854900):0.0882500,(((RL11_YEAST:
+0.1429600,RL11_SCHPO:0.0875000):0.0873900,RL11_TETTH:0.2339800):0.0652200,
+(R111_ARATH:0.0698900,RL11_CHLRE:0.1904000):0.0941200):0.0839000):0.0287300,
+RL11_LEICH:0.1414200):0.4521600,((RL5_METJA:0.1374100,RL5_METVA:0.2718300)
+:0.1528200,RL5_SULAC:0.3595300):0.0839100):0.0845700,RL5_HALMA:0.3691600)
+:0.8932200,RL5_MYCCA:0.1851800):0.1082600,RL5_MYCGE:0.2360800):0.0507100,
+RK5_ODOSI:0.6278600):0.0727300,(RL5_BUCAK:0.1570200,RL5_MICLU:0.2811600)
+:0.1017400):0.0420600,(RK5_CYAPA:0.1638300,RK5_EUGGR:0.4177100):0.0974800)
+:0.0807800,RL5X_THETH:0.2117200,RL5_THEMA:0.2253200);
=====================================
debian/tests/testdata/small.fas
=====================================
@@ -0,0 +1,185 @@
+>t1
+cctg-cccagtg-ac----taagttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aagactgtctctataagccgcctaaaaattaatctctaactgaagagtgttagatctcgt
+cgaaggacaagaagaccctatagagcttta--ttttaataaaa-attataaa--ttttta
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+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aaaactgtctctataagccctataaaaattaatatctaactgaagagtgttagatatcgt
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+a-taaattcggttggggcgaccagggaa---tataaatcatccccca-taaacagataac
+ttaatctagattatgaccctt-aaacaagatcaacaaatcaagctaccttagggataaca
+ggctaatcccgctaaagagtccttatcaatagcgggggttggcacctcgatgttggctta
+gggaatctatgtggcgcanaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctg
+>t2
+cctg-cccagtg-cac---tcaattcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+aagactgtctctataagccgcctaaaaattaatctctaactgaagagtgttagatatcgt
+cgaaggacaagaagaccctatagagcttta--ttttaacaaaa-actaaaaatttttcaa
+t-aaaattcggttggggcgaccagggaa---aataaatcatccccca-taagcagataaa
+tatatctaagttctgacccttaaaataagatcaacaaatcaagctaccttagggataaca
+ggctaatcccactaaagagtccttattaatagtggggattggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcgcgtaaagatggtttgttcaaccaataacaccctac
+gtgatctgagta
+cctgtcccagtg-at----attattcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaacggactaacgaaata
+aaaactgtctctataagccccataaaaattaatctctaactgaagattgttagatttaat
+cgaaggacaagaagaccctatagagcttca--ttttaatatag-atataaa---ctttaa
+t-aaaattcggttggggcgaccagggaa---aattaatcatccctta-ttaaaagataaa
+taaatctaattactgaccctt-aataaagatcacaagaacaagctaccttagggataaca
+ggctaatcctattaaagagtccttatcaataatgggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+cctg-cccagtg-at----attattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaacggaccaacgaaata
+aaaactgtctctataagccctataaaaattaatctctaactgaagagtgttagatttaat
+cgaaggacaagaagaccctatagagcttca--ttttaataaag-acttaaa---ctttaa
+t-aaaattcggttggggcgaccagggaa---aactaatcatccctta-tcaaaagataaa
+ttaatctaaatactgaccctt-aataaagatcacaagaacaagctaccttagggataaca
+ggctaatcctattaaagagtccttatcaataataggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+cctg-cccagtg-at----attattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaacggaccaacgaaata
+aaaactgtctctataagccctataaaaattaatctctaactgaagagtgttagatttaat
+cgaaggacaagaagaccctatagagcttca--ttttaataaag-acttaaa---ctttaa
+t-aaaattcggttggggcgaccagggaa---aactaatcatccctta-tcaaaagataaa
+ttaatctaaatactgaccctt-aataaagatcacaagaacaagctaccttagggatacca
+ggctaatcctattaaagagtccttatcaataataggggttggcgcctcgatgttggcttg
+gggaatctatgtagcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctg
+>t3
+cctg-cccagtg-att---tacattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+aaaactgtctctataagccgcataaaaattaatctctaactgaagagtgttagattacgt
+cgaaggacaagaagaccctatagagcttca--tcttaatgaag-actaaaa---cttcac
+t-aaaattcggttggggcgaccggggaa---aatcaatcatccctaa-taaatagataaa
+taaatctaaatactgaccctt-aacaaagatcaccagaataagctaccttagggataaca
+ggctaatcccgttaaagagtccttatcaataatgggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+cctg-cccagtg-att---cacattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aagg-agcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aaacctgtctctataagccacataaaaattaatctctaactgaagagtgttagattgcgt
+cgaaggacaagaagaccctatagagcttca--ttttaatgaag-actaaaa---cttccc
+t-aaaattcggttggggcgaccggggaa---aatttatcatccctaa-ttaatagatcaa
+ttaatcaaatttttgaccctt-aacaaagatcaccaaaataagctaccttagggataaca
+ggctaatcccgttaaagagtccttatcaataacgggggttggcacctcgatgttggctta
+gggaacctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+cctg-cccagtg-act---aacgttccacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaatggactaacgaaata
+aaaactgtctctataagcccaataaaaattaatctctaactgaagattgttagatatcgt
+tgaaggacaagaagaccctatagagcttca--ttttaataaaa-actaata---ttttaa
+t-aaaattcggttggggcgaccggggaa---gaccaatcatccccta-caaaaagattaa
+ttaatcttctctatgaccctt-aattaagatcaccagaataagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtgggggttggcacctcgatgttggctta
+gggaatctatacggcgcaaaagtcatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagta
+cctg-cccagtg-cac---aaagttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaaaggaccaacgaaata
+aagactgtctctataagcaaaataaaaattaatctctaactgaagagtgttagattatgt
+cgaaggacaagaagaccctatagagcttaa--ttctaataaaa-atatata---ttttaa
+t-aaaattcggttggggcgaccagggaa---tacaaatcatccctat-tcaaaagatacg
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+ggctaatcctattaaagagttcttatcaatagtgggggttggcacctcgatgttggctta
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+gtgatctg
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+cctg-cccagtg-act---aacgttcaacg-gcc-gcg--agt-atcct-aaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaaaggattaacgaaata
+aaaactgtctctatgagccctataaaaattaatctctaactgaagagtgttagatatcgt
+cgaaggacaagaagaccctatagagcttta--ttttaacaaaa-attaaaga--cttttc
+t-aaaattcggttggggcgacctgggaa-attactaaacatccctct-acatcagataaa
+taaatctcacttctgaccctt-aataaagatcaccaaatcaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtggggtttggcacctcgatgttggctta
+gggaatctatgcggcgcaaaagtcgcataaagatggtttgttcaaccaataataccctac
+gtgatctgagta
+cctg-cccagtg-aca---aatgttcaacg-gcc-gcg---gt-atcctgaaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaatggactaacgaaata
+aaaactgtctctataagccccctaaaaattaatctctaactgaagagtgttagatactat
+cgaaggacaagaagaccctatagagcttca--tcctaacaaaa-tcaaattta-ttttta
+c-tggattcggttggggcgaccggggaaaattattaatcatccctct-ttaatagataaa
+taaatcccaatcctgaccctt-aataaagatcacaagatcaagctaccttagggataaca
+ggctaatttcactaaagagtccttatcaatagtgaagtttggcacctcgatgttggctta
+gggattctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
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+aaggtagcataatcacttg-cccgttaattgcgggctagaatgaaaggatctacgaaata
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+t-aaaattcggttggggcgacccgggaa--acacatatcatcccgca-aaattagataaa
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+ggctaatcccactaaagagtccttatcaatagtggggtttggcacctcgatgttggctta
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+aaggtagcataatcacttg-cccgttaattgcgggctagaatgaaaggatctacgaaata
+aaaactgtctctataagccctataaaaattatcctctaactgaagactgttagatagcgt
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+c-aaaattcggttggggcgacctgggaa-ataaataatcatcccatg-aaataagataaa
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+ggctaatccctctaaagagtccttatcaatagtgggggttggcacctcgatgtgggctta
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+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggataaacgaaata
+aacactgtctctgtaagtcacttaaaaattaccctctaaccgaagagtgttagatagagt
+cgaaggacaagaagaccctatagagcttta--tttaaacaaat-ataaaaa---atttac
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+taaatcaagatattgaccctt-gtataagatcactaaaacaagctaccttagggataaca
+ggctaatctcactagagagtccttatcaatagtgaggattggcacctcgatgttggctta
+gggaatctctatgacgcaaaagtcatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+cctg-cccagtg-a-----gtatttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctggaatgaaaggataaacgaaata
+gatactgtctctataagcctcttaaaaattaccctctaaccgaagagcgttagatatcgt
+cgaaggacaagaagaccctatagagcttaa--tttaaataaat-ataaaaa---atttac
+t-aagattcggttggggcgaccggggaaaattacttatcatccctaa-actaaagataaa
+ttaatcaaaatactgaccctt-attcaagatcactaaaacaagctaccttagggataaca
+ggctaatctcactagagagtccttatcgatagtgaggattggcacctcgatgttggctta
+gggaatctctatggcgcaaaagccatataaagatggtttgttcaaccaataacaccctac
+gtgatctg
=====================================
debian/tests/testdata/small.rooted.tip.tree
=====================================
@@ -0,0 +1 @@
+(t1:0.1,(t2:0.1,(t3:0.1,(t4:0.1,t5:0.1)B:0.1)C:0.1)A:0.1)R;
=====================================
debian/tests/testdata/small.rooted.tree
=====================================
@@ -0,0 +1 @@
+((t1:0.1,t2:0.1)A:0.1,(t3:0.1,(t4:0.1,t5:0.1)B:0.1)C:0.1)R;
=====================================
debian/tests/testdata/small.tree
=====================================
@@ -0,0 +1 @@
+(((t1:0.05593029,t2:0.04538842)0.000000:0.00182366,t3:0.06750731)0.945628:0.01466403,t4:0.08070140,t5:0.10953765);
=====================================
debian/tests/testdata/worms16s.fas
=====================================
@@ -0,0 +1,430 @@
+>Allobophora_caliginosa
+cctg-cccagtg-ac----taagttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aagactgtctctataagccgcctaaaaattaatctctaactgaagagtgttagatctcgt
+cgaaggacaagaagaccctatagagcttta--ttttaataaaa-attataaa--ttttta
+a-taaattcggttggggcgaccagggaa-attattaatcatccccta-taaaaagataaa
+ttaatctaaactctgaccctt-aatcaagatcaacaaatcaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtggggattggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Allolobophora_tuberculata
+cctg-cccagtg-ac----taagttcaacg-gtccgcg--tgt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aagactgtctctataagccacctaaaaattaatctctaactgaagagtgttagatctcgt
+cgaaggacaagaagaccctatagagcttta--ttttaataaaa-attataaa--ttttta
+a-taaattcggttggggcgaccagggaa-attattaatcatccccta-taaaaagataaa
+ttaatctaaactctgaccctt-aatcaagatcaacaaatcaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtgggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Allolobophora_nocturna
+cctg-cccagtg-ac----ttagttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+aaaactgtctctataagcctaataaaaattaatctctaactgaagagtgttagataccgt
+cgaaggacaagaagaccctatagagcttta--ttttaacaaaa-atccaaaaattttcaa
+t-aaaattcggttggggcgaccagggaa---tataaatcatccccta-taaacagataac
+ttaatctagactctgaccctt-aaacaagatcaacaaatcaagctaccttagggataaca
+ggctaatcccgctaaagagtccttatcaatagtgggggttggcacctcgatgttggctta
+gggaatctatgcggcgcaaaagtcgcataaagatggtttgttc-accaataataccctac
+gtgatctgagtt
+>Allolobophora_longa
+cctg-cccagtg-ac----ttagttgaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aaaactgtctctataagccctataaaaattaatatctaactgaagagtgttagatatcgt
+cgaaggacaagaagaccctatagagcttta--ttttaataaaa-tataaaaaaattttag
+a-taaattcggttggggcgaccagggaa---tataaatcatccccca-taaacagataac
+ttaatctagattatgaccctt-aaacaagatcaacaaatcaagctaccttagggataaca
+ggctaatcccgctaaagagtccttatcaatagcgggggttggcacctcgatgttggctta
+gggaatctatgtggcgcanaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtc
+>Allolobophora_trapezoides
+cctg-cccagtg-cac---tcaattcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+aagactgtctctataagccgcctaaaaattaatctctaactgaagagtgttagatatcgt
+cgaaggacaagaagaccctatagagcttta--ttttaacaaaa-actaaaaatttttcaa
+t-aaaattcggttggggcgaccagggaa---aataaatcatccccca-taagcagataaa
+tatatctaagttctgacccttaaaataagatcaacaaatcaagctaccttagggataaca
+ggctaatcccactaaagagtccttattaatagtggggattggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcgcgtaaagatggtttgttcaaccaataacaccctac
+gtgatctgagta
+>Allolobophora_clorotica
+cctgtcccagtg-at----attattcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaacggactaacgaaata
+aaaactgtctctataagccccataaaaattaatctctaactgaagattgttagatttaat
+cgaaggacaagaagaccctatagagcttca--ttttaatatag-atataaa---ctttaa
+t-aaaattcggttggggcgaccagggaa---aattaatcatccctta-ttaaaagataaa
+taaatctaattactgaccctt-aataaagatcacaagaacaagctaccttagggataaca
+ggctaatcctattaaagagtccttatcaataatgggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Allolobophora_chloroticaG
+cctg-cccagtg-at----attattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaacggaccaacgaaata
+aaaactgtctctataagccctataaaaattaatctctaactgaagagtgttagatttaat
+cgaaggacaagaagaccctatagagcttca--ttttaataaag-acttaaa---ctttaa
+t-aaaattcggttggggcgaccagggaa---aactaatcatccctta-tcaaaagataaa
+ttaatctaaatactgaccctt-aataaagatcacaagaacaagctaccttagggataaca
+ggctaatcctattaaagagtccttatcaataataggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Allolobophora_choroticaP
+cctg-cccagtg-at----attattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaacggaccaacgaaata
+aaaactgtctctataagccctataaaaattaatctctaactgaagagtgttagatttaat
+cgaaggacaagaagaccctatagagcttca--ttttaataaag-acttaaa---ctttaa
+t-aaaattcggttggggcgaccagggaa---aactaatcatccctta-tcaaaagataaa
+ttaatctaaatactgaccctt-aataaagatcacaagaacaagctaccttagggatacca
+ggctaatcctattaaagagtccttatcaataataggggttggcgcctcgatgttggcttg
+gggaatctatgtagcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Allolobophora_icterica
+cctg-cccagtg-att---tacattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+aaaactgtctctataagccgcataaaaattaatctctaactgaagagtgttagattacgt
+cgaaggacaagaagaccctatagagcttca--tcttaatgaag-actaaaa---cttcac
+t-aaaattcggttggggcgaccggggaa---aatcaatcatccctaa-taaatagataaa
+taaatctaaatactgaccctt-aacaaagatcaccagaataagctaccttagggataaca
+ggctaatcccgttaaagagtccttatcaataatgggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Allolobophora_molleri
+cctg-cccagtg-att---cacattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aagg-agcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aaacctgtctctataagccacataaaaattaatctctaactgaagagtgttagattgcgt
+cgaaggacaagaagaccctatagagcttca--ttttaatgaag-actaaaa---cttccc
+t-aaaattcggttggggcgaccggggaa---aatttatcatccctaa-ttaatagatcaa
+ttaatcaaatttttgaccctt-aacaaagatcaccaaaataagctaccttagggataaca
+ggctaatcccgttaaagagtccttatcaataacgggggttggcacctcgatgttggctta
+gggaacctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Allolobophora_rosea
+cctg-cccagtg-act---aacgttccacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaatggactaacgaaata
+aaaactgtctctataagcccaataaaaattaatctctaactgaagattgttagatatcgt
+tgaaggacaagaagaccctatagagcttca--ttttaataaaa-actaata---ttttaa
+t-aaaattcggttggggcgaccggggaa---gaccaatcatccccta-caaaaagattaa
+ttaatcttctctatgaccctt-aattaagatcaccagaataagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtgggggttggcacctcgatgttggctta
+gggaatctatacggcgcaaaagtcatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagta
+>Eiseniella_tetraedra
+cctg-cccagtg-cac---aaagttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaaaggaccaacgaaata
+aagactgtctctataagcaaaataaaaattaatctctaactgaagagtgttagattatgt
+cgaaggacaagaagaccctatagagcttaa--ttctaataaaa-atatata---ttttaa
+t-aaaattcggttggggcgaccagggaa---tacaaatcatccctat-tcaaaagatacg
+taaatcttgaaaatgaccctt-aaacaagatcacaaaaacaagctaccttagggataaca
+ggctaatcctattaaagagttcttatcaatagtgggggttggcacctcgatgttggctta
+gggaatctatacggcgcaaaagtcgtataaagatggtttgttcaaccaataac-ccctac
+gtgatctgagta
+>Dendrobaena_octaedra
+cctg-cccagtg-act---aacgttcaacg-gcc-gcg--agt-atcct-aaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaaaggattaacgaaata
+aaaactgtctctatgagccctataaaaattaatctctaactgaagagtgttagatatcgt
+cgaaggacaagaagaccctatagagcttta--ttttaacaaaa-attaaaga--cttttc
+t-aaaattcggttggggcgacctgggaa-attactaaacatccctct-acatcagataaa
+taaatctcacttctgaccctt-aataaagatcaccaaatcaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtggggtttggcacctcgatgttggctta
+gggaatctatgcggcgcaaaagtcgcataaagatggtttgttcaaccaataataccctac
+gtgatctgagta
+>Scherotheca_gigas
+cctg-cccagtg-aca---aatgttcaacg-gcc-gcg---gt-atcctgaaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaatggactaacgaaata
+aaaactgtctctataagccccctaaaaattaatctctaactgaagagtgttagatactat
+cgaaggacaagaagaccctatagagcttca--tcctaacaaaa-tcaaattta-ttttta
+c-tggattcggttggggcgaccggggaaaattattaatcatccctct-ttaatagataaa
+taaatcccaatcctgaccctt-aataaagatcacaagatcaagctaccttagggataaca
+ggctaatttcactaaagagtccttatcaatagtgaagtttggcacctcgatgttggctta
+gggattctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagtc
+>Octolasion_lacteum
+cctg-cccagtg-act---aatattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccgttaattgcgggctagaatgaaaggatctacgaaata
+aaaactgtctctataagccctataaaaattatcctctaactgaagactgttagatagcgt
+cgaaggacaagaagaccctatagagcttca--ttttaatagaa-gcttacta--ctctaa
+t-aaaattcggttggggcgacccgggaa--acacatatcatcccgca-aaattagataaa
+taaatcctcatattgaccctt-agttaagatcaaaagaacaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtggggtttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaaaaataccctac
+gtgatctgagtt
+>Octolasion_cyanemum
+cctg-cccagtg-act---aatattcaacg-tgt-ccgcgtgt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccgttaattgcgggctagaatgaaaggatctacgaaata
+aaaactgtctctataagccctataaaaattatcctctaactgaagactgttagatagcgt
+cgaaggacaagaagaccctatagagcttca--ttttaatagaa-gcttacta--ctctaa
+t-aaaattcggttggggcgacccgggaa--acacatatcatcccgca-aaattagataaa
+taaatcctcatattgaccctt-agttaagatcaaaagaacaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtggggtttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaaaaataccctac
+gtgatctgagtt
+>Octolasion_lacteumoscuro
+cctgtcccagtg-act---aacattcaacg-gcc-gcg--tgt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccgttaattgcgggctagaatgaaaggatctacgaaata
+aaaactgtctctataagcccgataaaaattaacctctaactgaagactgttagataccgt
+cgaaggacaagaagaccctatagagcttca--ttttaatagaa-atatacta--ttctta
+c-aaaattcggttggggcgacctgggaa-ataaataatcatcccatg-aaataagataaa
+taaatctctatattgaccct--agttaagatcacaagaacaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtggggtttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaaaaataccctac
+gtgatctgagtt
+>Allolobophora_minuscula
+cctg-cccagtg-ac----acagttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtggactagaatgaatggattaacgaaata
+aaaactgtctctataagtcaaataaaaattaatctccaattgaagaacattggataaact
+cgaaggacaagaagaccctatagagcttta--ttttaataaaa-tataaaa---ttttac
+t-aaaattcggttggggcgacctgggaa-gtaactaatcatcctact-tcaatagataaa
+taaatctcctttttgaccctt-aatcaagatcattaaaacaagctaccttagggataaca
+ggctaatccctctaaagagtccttatcaatagtgggggttggcacctcgatgtgggctta
+gggaatctatgtaacgcaaaagtcacataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Lumbricus_festivus
+cctg-cccagtg-taa---taatttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggataaacgaaata
+aacactgtctctgtaagtcacttaaaaattaccctctaaccgaagagtgttagatagagt
+cgaaggacaagaagaccctatagagcttta--tttaaacaaat-ataaaaa---atttac
+taaaaattcggttggggcgaccagggaa-attacttatcatccctaa-attaaagataaa
+taaatcaagatattgaccctt-gtataagatcactaaaacaagctaccttagggataaca
+ggctaatctcactagagagtccttatcaatagtgaggattggcacctcgatgttggctta
+gggaatctctatgacgcaaaagtcatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Lumbricus_friendi
+cctg-cccagtg-a-----gtatttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctggaatgaaaggataaacgaaata
+gatactgtctctataagcctcttaaaaattaccctctaaccgaagagcgttagatatcgt
+cgaaggacaagaagaccctatagagcttaa--tttaaataaat-ataaaaa---atttac
+t-aagattcggttggggcgaccggggaaaattacttatcatccctaa-actaaagataaa
+ttaatcaaaatactgaccctt-attcaagatcactaaaacaagctaccttagggataaca
+ggctaatctcactagagagtccttatcgatagtgaggattggcacctcgatgttggctta
+gggaatctctatggcgcaaaagccatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Lumbricus_friendi_irlanda
+cctg-cccagtg-ag----taatttcaacg-gcc-gcg--tgt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctggaatgaaaggataaacgaaata
+gatactgtctctataagcctcttaaaaattaccctctaaccgaagagcgttagatatcgt
+cgaaggacaagaagaccctatagagcttaa--tttaaataaat-ataaaaa---atttac
+t-aagattcggttggggcgaccggggaaaattacttatcatccctaa-actaaagataaa
+ttaatcaaaatactgaccctt-attcaagatcactaaaacaagctaccttagggataaca
+ggctaatctcactagagagtccttatcgatagtgaggattggcacctcgatgttggctta
+gggaatctctatggcgcaaaagccatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Lumbricus_terrestris
+cctg-cccagtg-------agtattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggataaacgaaata
+aatactgtctctataagccgcttaaaaattaccctctaaccgaagagtgttagatagcgt
+cgaaggacaagaagaccctatagagcttaa--tttaaataaat-ataaaaa---atttac
+t-aaaattcggttggggcgaccagggaa--ttacccatcatccctaa-acaaaagataaa
+tatatcaaaatactgaccctt-ctacaagatcactaaaacaagctaccctagggataaca
+ggctaatctcactagagagtccttatcaatagtgaggattggcacctcgatgttggctta
+gggaatctctatgacgcaaaagtcatataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Lumbricus_rubelus
+cctg-cccagtg-a-----tagtttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggattaacgaaata
+aaagctgtctctataagacccctaaaaattaccctttaaccgaagagtgttaaatagcgt
+cgaaggacaagaagaccctatagagcttaa--ttaaaataaat-acataaa---atttac
+t-aaaattcggttggggcgaccagggaa-attactaatcatccctaa-gtaaaagataaa
+ttaatctaaccattgaccctt-aatcaagatcactaaaacaagctaccttagggataaca
+ggctaatcttactagagagttcttatcaatagtagggtttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataacaccctac
+atgagctgagtt
+>Lumbricus_castaneus
+cctg-cccagtg-a-----gtaattcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcatttg-cccattaattgtgggctagaatgaaaggattaacgaaata
+aagactgtctctgcaagacacctaaaaattaccctctaaccgaagagcgttagatataat
+cgaaggacaagaagaccctatagagcttaa--tttaaacaaat-ataaaaa---atttac
+t-aaaattcggttggggcgaccgaggaa--atgattatcatcctcag-ataaaagataaa
+taaatctaactaatgaccctt-aactaagatcactaaaacaagctaccttagggataaca
+ggctaatctcactagagagtccttattaatagtgaggtttggcacctcgatgttggctta
+gggaatctgtgtggcgcaaaagtcacataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Eisenia_andrei
+cctg-cccagtg-aa----taatttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+aaaactgtctctataagtgacataaaaattaatctctaactgaagattgttagatatcgt
+cgaaggacaagaagaccctatagagcttta--ttttaataaat-aactata---atttat
+a-taaattcggttggggcgaccagggaa-attaaatatcatccctta-atagcagataac
+tcaatcacacacttgaccctttaccaaagatcatcaaaacaagctaccttagggataaca
+ggctaatcccactaaagagtccttatcaatagtggggtttggcacctcgatgttggctta
+gggaatctatatggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgagta
+>Eisenia_fetida
+cctg-cccagtg-aac---tcatttcaacg-gcc-gcg--agt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+aaaactgtctctataagtaacataaaaattaatctctaactgaagattgttagatagcat
+cgaaggacaagaagaccctatagagcttta--tttttacaaat-aactaaaa--tttata
+t-aaaattcggttggggcgaccggggaa-attggctatcatccccta-ataacagataaa
+taaatcacatacttgaccctt-tctaaagatcattaaaacaagctaccttagggataaca
+ggctaatcccgctaaagagtccttatcaatagcagggtttggcacctcgatgttggctta
+gggaatctatatggcgcaaaagtcatataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Allolobophora_oliveirae
+cctgtcccagtg-aac---atagttcaacggtcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaatggactaacgaaata
+aagactgtctctataagttgaataaaaattaatctctaactgaagactgttagataatat
+cgaaggacaagaagaccctatagagcttta--tttaaacaaaa-aaaatttatatttttg
+t-aaaattcggttggggcgaccagggaa---tttacatcatccctta-ttataagatgaa
+taaatctattttttgaccctt-attaaagatcatcagaacaagctaccttagggataaca
+ggctaatcctactaaagagtccttatcaatagtaggggttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataataccctac
+gtgatctgatta
+>Dendrobaena_attemsi
+cctg-cccagtg-acttaacaagttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+gatactgtctctataagtagcataaaaattaatctctaactgaagagtgttagatttaat
+cgaaggacaagaagaccctatagagcttta--tttaataaaagtataatcta--actttt
+t-ataattcggttggggcgaccagggaa-ataataaatcatccctca-ttataagataaa
+taaatctctcctatgaccctt-gaaaaagatcaaaaaactaagctaccttagggataaca
+ggctaatcctattaaagagtccttatcaataatagggtttggcacctcgatgttggctta
+gggaatctatatggcgcaaaagtcatataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Dendrobaena_rubida
+cctg-cccagtgaacttaacaagttcaacg-gtc-gcg--agt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggactaacgaaata
+gatactgtctctataagtagcataaaaattaatctctaactgaagagtgttagatttaat
+cgaaggacaagaagaccctatagagcttta--tttaataaaagtataaccta--actttt
+t-ataattcggttggggcgaccagggaa-acaataaatcatccctca-ttataagataaa
+taaatctctcctatgaccctt-gaaaaagatcaaaaaaccaagctaccttagggataaca
+ggctaatcctattaaagagtccttatcaataatagggtttggcacctcgatgttggctta
+gggaatctatgtggcgcaaaagtcatataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Eisenia_eiseni
+cctg-ttcagtgaactcaaaaagttcatcgagtc-gcg---gtgatcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaaaggaccaacgaaata
+gatactgtctctataagtatagtaaaaattaatctctaactgaagattgttagattccgt
+cgaaggacaagaagaccctatagagcttta--tttaataaaag-ataaatca--cttttt
+t-ataattcggttggggcgaccggggaa-gtaataaatcatccccta-taataagataac
+taaatctaatatatgaccctt-aaaaaagatcacaagaacaagctaccttagggataaca
+ggctaatcctattaaagagtccttatcgatagtagggtttggcacctcgatgttggctta
+gggaatctatatgacgcaaaagtcatataaagatggtttgttcaaccaataataccctac
+gtgatctgagtt
+>Dendrobaena_mammalis
+cctg-cccagtg-att---ctcattaaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttgtcctattaattgtggactagaatgaaggggccaacgaaata
+aaagctgtctctataagtaacataaaaattaatctctaactgaagaacgttagattccgt
+cgaaggacaagaagaccctatagagcttta--tttaatttaaa-ataaat----ttaaaa
+a-aaaattcggttggggcgaccagggaa---tataaatcatccctta-aataatgattaa
+ttaatctaagtcttgaccctttatacaagatcacaagaacaagctaccttagggataaca
+ggctaattttactaaagagtccttatcaatagtaaagtttggcacctcgatgttggctta
+gggaatctatatggcgcaaaagtcacataaagatggtttgttcaaccaataacaccctac
+gtgatctgagtt
+>Dendrobaena_madeirensis
+cctg--ccagtg-aca---caagttcaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcatttg-cccattaattgtgggctagaatgaaaggattaacgaaata
+aagtctgtctccataagacctgtaaaaattaatatctagatgaagaatactagatacctt
+cgaaggacaagaagaccctatagagcttta--ttttaacaaag-aacctaaataccttat
+t-aaaattcggttggggcgaccaggg---tttatttatcaacccttt-gcataagataaa
+ttaatcaatctaatgaccctt-tttaaagatcaagaaaacaagctaccttagggataaca
+ggctaatcccactaaagagttcttatccatagtgggggttggcacctcgatgttggctta
+gggtatctatgtggcgcaaaagtcacataaagatggtttgttcaaccaataactcactac
+gtgatctgagtt
+>Hornogaster_elisae
+cctg-cccagtg-ac----acagttcaccg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-tctattaattgtagactggaatgaaaggaaaaacgaaata
+taagctgtctctatagataaaacaaaaattaatatctaactgaagagtgttagataaaat
+cgaaggacaagaagaccctatagagcttta--tctaaacaaga-aataaca---tcttta
+t-aggattcggttggggcgaccaaggat-atctttaatcatccttca-ttaatagattta
+ttaatcaaaattttgatccta-aatataga-caataaaccaagctaccttagggataaca
+ggctaatcctgctagagagtccttatctaaagcagggattggcacctcgatgttggctta
+gggaaactaaataacgcaaaagtcacataaagatggtttgttcaaccaataatcccctac
+gtgatctgagtt
+>Criodrilus_lacuum
+cctg-cccagtg-ac----aaagtttaacg-gcc-gcg---gt-atcct-aaccgtg-ca
+aaggtagcataatcacttg-cccattaattgtgggctggaatgaacggataaacgaaata
+gaatctgtctctacagacaatataaaaattaatcactaattgaagacaattagataaaat
+cgaaggacaagaagaccctatagagcttaa--ttttaattgaa-gaaaat----tcatta
+t-aaaattcggttggggcgaccaaggac-attataaatcatccttaa-aaaaaagataaa
+taaatcaaaataatgaccctt-aataaagatcattaaatcaagctaccttagggataaca
+ggctaatcctactagagagtccttatcaaaagtaggggttggcacctcgatgttggctta
+gggaatctaaagaacgcaaaagtcgtattgggacggtttgttcaaccaataaaaccctac
+gtgatctgagtt
+>Prosellodrillus_practicola
+cctg-cccagtg-aac---aaagttcaacgagtc-gcg---gtgatcct-aaccgtgaca
+aaggtagcataatcacttg-cctattaattgtaggctagaatgaaaggaccaacgaaata
+aaagctgtctctataagtatcataaaaattattctctaactgaagactgttagataaaat
+cgaaggacaagaagaccctatagagcttta--ttttaataaag-acctttaagactttaa
+t-aagattcggttggggcgaccagggaaatactaaaatcatccctca-aaataagattca
+tagatcaaaataatgacccta-aacaaagatcaataaaacaagctaccttagggataaca
+gactaatcccgctagagagtccttatttatagcgggggttggcacctcgatgttggctta
+ggatatctatggggcgcagaagttccataaagatggtttgttcaaccaataatatcctac
+gtgatctgagtt
+>Dendrobaena_veneta
+cctgtcccagtg-aca---taagttcaacgcgcc-gcg--tgtaatcctgaaccgtgtca
+aaggtagcataatcacttgtcccattaattgtgggctagaatgaaaggattaacgaaata
+aaagctgtctctgtaagaaatataaaaattaatctctaattgaagagtattagatttaac
+tgaaggacaagaagaccctatagagcttta--tcacaatgaaa-aaacaaaat-attcac
+t-aagattcggttggggcgaccagggaa-tttatatatcatccctca-taacacgataaa
+tttatcaatctaaagaccctt-aatcaagatctaaaaaacaagctaccttagggataaca
+ggctaatcccattaaagagtccttatctacaatggggtttggcacctcgatgttggctta
+gggtatcagtacggcgcaaaagtcctacattgatggtttgttcaaccaataat-ccctac
+gtgatctgagtt
+>Dendrobaena_hortensis
+cctgtcccagtg-act---aaagttcaacg-gcc-gcg--agt-atcctgaaccgtgtca
+aaggtagcataataacttg-cccattaattgtgggctagaatgaaaggatttacgaaata
+taacctgtctctgtaagatatttaaaaattaatctctaattgaagaacattagatcaaat
+tgaaggacaagaagaccctatagagcttta--tctcaatggaa-aactatc---ttccgc
+t-aagattcggttggggcgaccagggaa-cttattaatcatccctca-caacaagatgaa
+taaatccaaataatgaccctt-aattaagatcaaaagaacaagctaccttagggataaca
+ggctaatcccattaaagagtccttatctataatggggtttggcacctcgatgttggctta
+gggtatcactatggcgcaaaagtcatattaagatggtttgttcaaccaataatcccctac
+gtgatctgagtt
+>Allolobophora_limicola
+cctg-cccagtg-aat-----aattcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cccattaattgtgggctagaatgaacggaccaacgaaata
+aaacctgtctctgtaaactttatataaattaaaatctaactgaa-tgtgttagatgccac
+tgaaggacaagaagaccctatagagcttaa--ttttaaattgt-actaaagt--cagtct
+a-aaaattcggttggggcgaccagggaa-attaataatcatccctta-gtcaaagattta
+ttaatctaataaatgacccta---ttaagatctaaagaacaagctaccttagggataaca
+ggctaatcctgctaaagagtccttatctatagcgggggttggcacctcgatgttggttta
+gggaatctatataatgcaaaagttatatgaagatggtttgttcaaccaataacaccctac
+gtgatctgagta
+>Amynthas_corticis
+cctg-cccagtgacaa---tatgttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcatttg-cctattaattgtaggctagaatgaaggggttaacgaaata
+aaagctgtctcaattaattaactaaaaattattttctatccgaagaaaggtagataatct
+cgaaggacaagaagaccctatagagcttaa--ttttaactata-gaatcata--ctatat
+a-aatattcggttggggcgacccagggt-ctaattaatcacccattaaataaaagataaa
+taaatctaataaatgatcccc---taaagatca-taaaacaagctaccttagggataaca
+ggctaatcccacttaagagtccttatcaaaagtggggtttggcacctcgatgttggctta
+gggtatctctatagcgcaaaagttatataaagatggtttgttcaaccaataattccctac
+gtgatctgagtt
+>Perionyx_excabatus
+cctg-cccagtgtaca---aaacttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataatcacttg-cctattaattgtaggctagaatgaacggatcaacgaaata
+aaacctgtctcagttagcaaactaaaaattattctccatatgaagaaatatggataaaat
+cgaaggacaagaagaccctatagagcttta--tttaaatcacagaccctatc--tagtgt
+a-ataattcggttggggcgaccaaggga--ataaatatcaccctaaaacacaaagattaa
+taaatcataaaattgaccctt---ataagatcacaagatcaagctaccttagggataaca
+ggctaatcccattcaagagtccatatcaacaatggggtttggcacctcgatgttggctta
+ggtaatctatgtagcgcaaaagctatattatgttggtttgttcaaccaataatttcctac
+gtgatctgagtt
+>Microscolex_phosphoreus
+cctgccctagtgaaca---aatgttcaacg-tgt-ccgcgtgt-atcctgaaccgtgtca
+aaggtagcataatcatttg-cctattaattgtaggctagaatgaacggataaacgaaata
+aaaactgtctcaatcagcaccctaaaaattaacttttgcgtgaagagtcgcaaataatat
+cgaaggacaagaagaccctatagagcttta--ttctatgtatagatacaata--ctatac
+t-aaaattcggttggggcgaccaaggac-attacaaaacacccttaagaaaaaagattta
+ttaatcaataaaatgaccctt--actaagatcacaaaaataagctaccttagggataaca
+ggctaatcctatttaagagttcatatctacaatagggcttggcacctcgatgttggctta
+ggaaatcaatatagcgcaaaagttatataaagatggtttgttcaaccaataatttcctac
+gtgatctgagtt
+>Eudrilus_eugeniae
+cctgtcccagtga------tatattcaacg-gcc-gcg---gt-atcct-aaccgtg-cg
+aaggtagcataatcacttg-cctattaattgtaggctagaatgaatggatgaacgaaaga
+taagctgtctcagttagtaatctaaaaattaatatctaattgaagaagattagataaaat
+cgaaggacaagaagaccctatagagctttaatttttaactata-aact------atagaa
+t-aaatattggttggggcgaccaaggta-taaaaaaatcatcctaactatcaacgataaa
+ttcatctttataaagaccctt-tttaaagatcataagaaccagctaccttagggataaca
+ggctaatcctattaaagagtccttatctataatagggattggcacctcgatgttggctta
+ggatatcaatatggcgcaaaagtcacatattaatggtttgttcaaccaataacttcctac
+gtgatctgagtt
+>Pontoscolex_corethurus
+cctg-cccagtgta-----aatcttcaacg-gcc-gcg---gt-atcct-aaccgtgtca
+aaggtagcataataacttg-cctattaattataggatagaatgaaagggtaaacgaaata
+ggagctgtctctattagcccaatgaaaattattttttaactgaagaaagttaaattcaac
+tgaaggacaagaagaccctatagagcttaa--tttaacctact-aaataag---taaaaa
+t-taaattcggttggggcgaccgatgct--ctacaaatcatcaccca-caaaaagaaata
+tacatctcaaaaaagaccctg--acccagatcaaaaaaacaagctaccttagggataaca
+ggctaatctcattaatgagtccccatctataatgttggttggcacctcgatgttggctta
+gggaatcaaaagggcgcagaagct-ttttaagacggtttgttcaaccattaaacccctac
+gtgatctgagtt
View it on GitLab: https://salsa.debian.org/med-team/libpll/-/compare/c001787248912c6bb4bbfef3ea1fdbf403410494...523a624f24154fbf10e4b08f150f903997ea032a
--
View it on GitLab: https://salsa.debian.org/med-team/libpll/-/compare/c001787248912c6bb4bbfef3ea1fdbf403410494...523a624f24154fbf10e4b08f150f903997ea032a
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