[med-svn] [Git][med-team/salmon][master] 8 commits: Add a patch for portable pausing in spinlocks.

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / salmon


Commits:
5b2d6af5 by Michael R. Crusoe at 2020-06-05T08:45:51+02:00
Add a patch for portable pausing in spinlocks.

- - - - -
fffdef8e by Michael R. Crusoe at 2020-06-05T08:45:51+02:00
debian/upstream/metadata: link to upstream's repository

- - - - -
115b394f by Michael R. Crusoe at 2020-07-16T12:43:13+02:00
New upstream version 1.3.0+ds1
- - - - -
3450efa7 by Michael R. Crusoe at 2020-07-16T12:43:13+02:00
routine-update: New upstream version

- - - - -
19edcb99 by Michael R. Crusoe at 2020-07-16T12:43:17+02:00
Update upstream source from tag 'upstream/1.3.0+ds1'

Update to upstream version '1.3.0+ds1'
with Debian dir 4d091545e07fbf2b6c031f3e85c13b7b7e0e7671
- - - - -
806f5cfb by Michael R. Crusoe at 2020-07-16T12:43:17+02:00
routine-update: debhelper-compat 13

- - - - -
b4670f5f by Michael R. Crusoe at 2020-07-16T12:47:26+02:00
kseq patch no longer needed

- - - - -
b3ba025b by Michael R. Crusoe at 2020-07-16T13:06:29+02:00
needs libgff-dev > 2

- - - - -


30 changed files:

- CMakeLists.txt
- README.md
- current_version.txt
- debian/changelog
- debian/control
- debian/external/pufferfish/include/FastxParserThreadUtils.hpp
- debian/patches/disable-version-check.patch
- − debian/patches/kseq
- + debian/patches/portable_pause
- debian/patches/series
- debian/patches/spelling
- debian/patches/use_debian_packaged_libs.patch
- debian/upstream/metadata
- doc/source/conf.py
- docker/Dockerfile
- docker/build_test.sh
- include/AlevinOpts.hpp
- include/AlignmentLibrary.hpp
- include/AtomicMatrix.hpp
- include/BAMQueue.hpp
- include/BAMQueue.tpp
- include/CollapsedCellOptimizer.hpp
- include/CollapsedEMOptimizer.hpp
- include/CollapsedGibbsSampler.hpp
- include/DistributionUtils.hpp
- include/EMUtils.hpp
- include/FragmentLengthDistribution.hpp
- include/FragmentStartPositionDistribution.hpp
- include/GZipWriter.hpp
- include/SBModel.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/c0a3079ca73dcaa2dff9026cc57284a0cb08e64a...b3ba025bac81ed5b94b8f48c32c791c43d5c9d42

-- 
View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/c0a3079ca73dcaa2dff9026cc57284a0cb08e64a...b3ba025bac81ed5b94b8f48c32c791c43d5c9d42
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200716/78087276/attachment.html>