[med-svn] [Git][med-team/python-biom-format][master] 5 commits: Add python3-h5py to depends - this is more than a test-only dependency

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / python-biom-format


Commits:
4f8dc67e by Nilesh Patra at 2020-07-19T01:21:17+05:30
Add python3-h5py to depends - this is more than a test-only dependency

- - - - -
1af2dc84 by Nilesh Patra at 2020-07-19T01:22:03+05:30
Fix import-name

- - - - -
57dcd51b by Nilesh Patra at 2020-07-19T01:30:56+05:30
Fix lintian

- - - - -
f2e1d930 by Nilesh Patra at 2020-07-19T01:31:07+05:30
Create manpages

- - - - -
35c8cb7d by Nilesh Patra at 2020-07-19T01:31:17+05:30
compat version: 13

- - - - -


6 changed files:

- + debian/biom.1
- debian/control
- + debian/createmanpages
- + debian/manpages
- + debian/python-biom-format-doc.lintian-overrides
- + debian/tests/pkg-python/import-name


Changes:

=====================================
debian/biom.1
=====================================
@@ -0,0 +1,51 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.12.
+.TH BIOM "1" "July 2020" "biom 2.1.8" "User Commands"
+.SH NAME
+biom \- Biological Observation Matrix (BIOM) format (Python 3)
+.SH SYNOPSIS
+.B biom
+[\fI\,OPTIONS\/\fR] \fI\,COMMAND \/\fR[\fI\,ARGS\/\fR]...
+.SH OPTIONS
+.TP
+\fB\-\-version\fR
+Show the version and exit.
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+Show this message and exit.
+.SS "Commands:"
+.TP
+add\-metadata
+Add metadata to a BIOM table.
+.TP
+convert
+Convert to/from the BIOM table format.
+.TP
+export\-metadata
+Export metadata as TSV.
+.TP
+from\-uc
+Create a BIOM table from a vsearch/uclust/usearch BIOM...
+.TP
+head
+Dump the first bit of a table.
+.TP
+normalize\-table
+Normalize a BIOM table.
+.TP
+show\-install\-info
+Provide information about the biom\-format installation.
+.TP
+subset\-table
+Subset a BIOM table.
+.TP
+summarize\-table
+Summarize sample or observation data in a BIOM table.
+.TP
+table\-ids
+Dump IDs in a table.
+.TP
+validate\-table
+Validate a BIOM\-formatted file.
+.SH AUTHOR
+ This manpage was written by Nilesh Patra for the Debian distribution and
+ can be used for any other usage of the program.


=====================================
debian/control
=====================================
@@ -4,7 +4,7 @@ Uploaders: Andreas Tille <tille at debian.org>
 Section: python
 Testsuite: autopkgtest-pkg-python
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                dh-python,
                help2man,
                bash-completion,
@@ -28,7 +28,8 @@ Rules-Requires-Root: no
 
 Package: python3-biom-format
 Architecture: any-amd64 any-arm64 armel armhf any-i386 any-mips64el mipsel any-ppc64el
-Depends: ${misc:Depends},
+Depends: python3-h5py,
+         ${misc:Depends},
          ${python3:Depends},
          ${shlibs:Depends}
 Suggests: python-biom-format-doc


=====================================
debian/createmanpages
=====================================
@@ -0,0 +1,29 @@
+#!/bin/sh
+MANDIR=debian
+mkdir -p $MANDIR
+
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
+NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
+PROGNAME=`grep "^Package:" debian/control | sed 's/^Package: *//' | head -n1`
+
+AUTHOR=".SH AUTHOR\n \
+This manpage was written by $DEBFULLNAME for the Debian distribution and\n \
+can be used for any other usage of the program.\
+"
+
+# If program name is different from package name or title should be
+# different from package short description change this here
+progname=biom
+help2man --no-info --no-discard-stderr --help-option="-h" \
+         --name="$NAME" \
+            --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+echo "$MANDIR/*.1" > debian/manpages
+
+cat <<EOT
+Please enhance the help2man output.
+The following web page might be helpful in doing so:
+    http://liw.fi/manpages/
+EOT
+


=====================================
debian/manpages
=====================================
@@ -0,0 +1 @@
+debian/*.1


=====================================
debian/python-biom-format-doc.lintian-overrides
=====================================
@@ -0,0 +1,2 @@
+# False positive
+embedded-javascript-library usr/share/doc/python-biom-format-doc/html/_static/language_data.js please use sphinx


=====================================
debian/tests/pkg-python/import-name
=====================================
@@ -0,0 +1 @@
+biom



View it on GitLab: https://salsa.debian.org/med-team/python-biom-format/-/compare/c09032e07b5c805e1e94db040e79c57434dba1d4...35c8cb7dc1e940a14949a03a6ea59761ce7ef823

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-biom-format/-/compare/c09032e07b5c805e1e94db040e79c57434dba1d4...35c8cb7dc1e940a14949a03a6ea59761ce7ef823
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