[med-svn] [Git][med-team/nibabel][master] Upstream switched to pytest which works now, however this version has issues with sphinx

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / nibabel


Commits:
454c18fe by Andreas Tille at 2020-07-21T15:49:53+02:00
Upstream switched to pytest which works now, however this version has issues with sphinx

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -5,6 +5,11 @@ nibabel (3.1.1-1) UNRELEASED; urgency=medium
   * Update Homepage
   * Rules-Requires-Root: no (routine-update)
   * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
+  * Switch build time test from nose to pytest
+    Closes: #964610
+  TODO:
+    * Fix Sphinx build (see FIXME in d/control + d/rules)
+    * Switch autopkgtest from nose to pytest
 
  -- Andreas Tille <tille at debian.org>  Tue, 21 Jul 2020 08:23:15 +0200
 


=====================================
debian/control
=====================================
@@ -17,6 +17,7 @@ Build-Depends: debhelper-compat (= 12),
                help2man,
                python3-sphinx,
                python3-matplotlib,
+               python3-texext,
                libjs-mathjax,
                python3-mock,
                python3-numpydoc,
@@ -25,7 +26,8 @@ Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/nibabel
 Vcs-Git: https://salsa.debian.org/med-team/nibabel.git
 Homepage: https://nipy.org/nibabel/
-Rules-Requires-Root: no
+#FIXME: See dirty hack in d/rules
+#Rules-Requires-Root: no
 
 Package: python3-nibabel
 Architecture: all


=====================================
debian/rules
=====================================
@@ -13,7 +13,14 @@ export MPLCONFIGDIR=$(CURDIR)/build
 override_dh_auto_build:
 	dh_auto_build
 	# and docs
-	PYTHONPATH=$(CURDIR) $(MAKE) -C doc html SPHINXBUILD=/usr/share/sphinx/scripts/python3/sphinx-build PYTHON=python3
+	# FIXME: Really dirty hack to avoid 
+	#   Exception occurred:
+	#  File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 776, in _open_file_or_url
+	#    with open(fname, encoding=encoding) as f:
+	# FileNotFoundError: [Errno 2] No such file or directory: '/usr/share/matplotlib/mpl-data/matplotlibrc'
+	# This does not even work
+	# cp /etc/matplotlibrc /usr/share/matplotlib/mpl-data/
+	PYTHONPATH=$(CURDIR) $(MAKE) -C doc html SPHINXBUILD=/usr/share/sphinx/scripts/python3/sphinx-build PYTHON=python3 || true
 	# but remove jquery copy (later on link to Debian's version)
 	-rm build/html/_static/jquery.js
 	# objects inventory is of no use for the package
@@ -24,7 +31,7 @@ override_dh_auto_build:
 # enable when we believe that the tests should pass
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-	PYBUILD_SYSTEM=custom PYBUILD_TEST_ARGS="PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m nose --verbose" dh_auto_test
+	PYBUILD_SYSTEM=custom PYBUILD_TEST_ARGS="PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" dh_auto_test
 endif
 
 ## immediately useable documentation



View it on GitLab: https://salsa.debian.org/med-team/nibabel/-/commit/454c18fef3a7a7e130954073bd2638adb7f88a7b

-- 
View it on GitLab: https://salsa.debian.org/med-team/nibabel/-/commit/454c18fef3a7a7e130954073bd2638adb7f88a7b
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200721/559f33f7/attachment-0001.html>