Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e2855152 by Andreas Tille at 2020-07-22T13:44:14+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,173 +1,177 @@
-Last-Update: Wed, 22 Jul 2020 01:42:04 +0000
+Last-Update: Wed, 22 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {imaging,covid-19} |
+ dcmtk | 172 | {imaging,covid-19} |
orthanc | 90 | {practice,covid-19,imaging} |
orthanc-wsi | 43 | {his,laboratory,covid-19,imaging,practice,oncology} |
gdcm | 40 | {imaging-dev} |
- htsjdk | 30 | {bio-dev} |
+ htsjdk | 31 | {bio-dev} |
dicom3tools | 23 | {imaging} |
dcm2niix | 22 | {imaging} |
dicomscope | 21 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
+ ngs-sdk | 17 | {bio-dev} |
gdcm | 15 | {covid-19,imaging} |
- ngs-sdk | 15 | {bio-dev} |
gdcm | 13 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ ngs-sdk | 12 | {bio-dev} |
invesalius | 11 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
- jebl2 | 10 | {bio-dev} |
+ jebl2 | 11 | {bio-dev} |
+ adun.app | 10 | {bio} |
pixelmed | 10 | {imaging} |
- adun.app | 9 | {bio} |
lagan | 9 | {bio} |
minc-tools | 9 | {imaging} |
psychopy | 9 | {psychology} |
vtk-dicom | 9 | {imaging} |
+ libdivsufsort | 8 | {bio-dev} |
melting | 8 | {cloud,bio} |
orthanc-webviewer | 8 | {imaging} |
+ biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
king | 7 | {typesetting,imaging} |
- libdivsufsort | 7 | {bio-dev} |
openslide | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
+ paraclu | 7 | {bio,cloud} |
plastimatch | 7 | {imaging} |
treeview | 7 | {bio,bio-phylogeny} |
bart-view | 6 | {imaging} |
- biojava-live | 6 | {bio-dev} |
biomaj3-cli | 6 | {cloud} |
biosig4c++ | 6 | {physics,imaging} |
+ fastlink | 6 | {bio,cloud} |
libminc | 6 | {imaging-dev} |
+ librg-utils-perl | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
- paraclu | 6 | {bio,cloud} |
+ phyutility | 6 | {bio,cloud} |
+ rdp-readseq | 6 | {bio} |
+ sibsim4 | 6 | {bio,cloud} |
+ sigma-align | 6 | {bio,cloud,bio-phylogeny} |
+ anfo | 5 | {cloud,bio} |
biomaj3-daemon | 5 | {bio} |
ea-utils | 5 | {bio} |
elastix | 5 | {imaging} |
- fastlink | 5 | {bio,cloud} |
getdata | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
+ mauve-aligner | 5 | {bio} |
+ mipe | 5 | {cloud,bio} |
mlv-smile | 5 | {bio,cloud} |
+ ncbi-seg | 5 | {bio} |
+ neobio | 5 | {cloud,bio} |
orthanc-postgresql | 5 | {imaging} |
- phyutility | 5 | {bio,cloud} |
+ piler | 5 | {bio} |
pymia | 5 | {imaging-dev} |
rdp-alignment | 5 | {bio} |
- rdp-readseq | 5 | {bio} |
- sibsim4 | 5 | {bio,cloud} |
- sigma-align | 5 | {bio,cloud,bio-phylogeny} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ stacks | 5 | {bio} |
+ transtermhp | 5 | {bio} |
zalign | 5 | {cloud,bio} |
- anfo | 4 | {cloud,bio} |
+ alter-sequence-alignment | 4 | {bio} |
+ daligner | 4 | {bio,bio-ngs} |
+ ecopcr | 4 | {bio} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
gatb-core | 4 | {bio} |
+ ipig | 4 | {bio} |
king-probe | 4 | {bio} |
- mauve-aligner | 4 | {bio} |
+ libncl | 4 | {bio} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
mhap | 4 | {bio-ngs,bio} |
- mipe | 4 | {cloud,bio} |
mrs | 4 | {bio} |
- ncbi-seg | 4 | {bio} |
- neobio | 4 | {cloud,bio} |
nutsqlite | 4 | {tools} |
- piler | 4 | {bio} |
+ perm | 4 | {cloud,bio} |
+ predictprotein | 4 | {bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ probabel | 4 | {bio,cloud} |
+ rdp-classifier | 4 | {bio} |
+ relion | 4 | {bio} |
+ saint | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
scythe | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
- stacks | 4 | {bio} |
- transtermhp | 4 | {bio} |
- alter-sequence-alignment | 3 | {bio} |
+ squizz | 4 | {bio,cloud} |
+ staden | 4 | {bio} |
+ ampliconnoise | 3 | {bio,cloud} |
bandage | 3 | {bio} |
+ beast2-mcmc | 3 | {bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
+ bio-rainbow | 3 | {bio} |
+ blasr | 3 | {bio-ngs,bio} |
brig | 3 | {bio} |
busco | 3 | {bio,covid-19} |
- daligner | 3 | {bio,bio-ngs} |
- ecopcr | 3 | {bio} |
+ dascrubber | 3 | {bio} |
+ dazzdb | 3 | {bio} |
+ dindel | 3 | {bio} |
edtsurf | 3 | {bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {cloud,bio} |
- ipig | 3 | {bio} |
- libncl | 3 | {bio} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ harvest-tools | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
+ libpal-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
+ maffilter | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
microbegps | 3 | {bio} |
multiqc | 3 | {bio,covid-19} |
openslide | 3 | {imaging-dev} |
oscar | 3 | {data,practice,tools} |
- perm | 3 | {cloud,bio} |
- predictprotein | 3 | {bio} |
- proalign | 3 | {bio,bio-phylogeny} |
- probabel | 3 | {bio,cloud} |
- rdp-classifier | 3 | {bio} |
- relion | 3 | {bio} |
+ pbdagcon | 3 | {bio} |
+ phybin | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
+ repeatmasker-recon | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
- saint | 3 | {bio} |
- salmon | 3 | {covid-19,bio} |
+ scrm | 3 | {bio} |
seqmagick | 3 | {bio,covid-19} |
- squizz | 3 | {bio,cloud} |
- staden | 3 | {bio} |
+ sga | 3 | {bio} |
+ sprai | 3 | {bio} |
tnseq-transit | 3 | {bio,covid-19} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
- ampliconnoise | 2 | {bio,cloud} |
+ acedb | 2 | {cloud,bio} |
arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
baitfisher | 2 | {bio} |
- beast2-mcmc | 2 | {bio} |
- beast-mcmc | 2 | {bio,bio-phylogeny} |
- bio-rainbow | 2 | {bio} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
bio-tradis | 2 | {bio,bio-dev} |
bitseq | 2 | {bio} |
- blasr | 2 | {bio-ngs,bio} |
canu | 2 | {bio} |
centrifuge | 2 | {covid-19,bio} |
clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
- dascrubber | 2 | {bio} |
- dazzdb | 2 | {bio} |
delly | 2 | {covid-19,bio} |
- dindel | 2 | {bio} |
estscan | 2 | {bio} |
- fastml | 2 | {bio} |
- fsm-lite | 2 | {bio} |
ghmm | 2 | {bio} |
- harvest-tools | 2 | {bio} |
hinge | 2 | {bio} |
jellyfish1 | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
- libpal-java | 2 | {bio-dev} |
- maffilter | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
murasaki | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
patman | 2 | {bio} |
- pbdagcon | 2 | {bio} |
phast | 2 | {bio} |
- phybin | 2 | {bio} |
+ phipack | 2 | {bio} |
placnet | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
prottest | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
pscan-tfbs | 2 | {bio} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
radiant | 2 | {bio} |
+ rambo-k | 2 | {bio} |
rampler | 2 | {bio} |
- repeatmasker-recon | 2 | {bio} |
roguenarok | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
- scrm | 2 | {bio} |
segemehl | 2 | {bio} |
seqsero | 2 | {bio} |
- sga | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
- sprai | 2 | {bio} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
sweed | 2 | {bio} |
+ velvetoptimiser | 2 | {bio} |
yaha | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
@@ -179,16 +183,13 @@ Last-Update: Wed, 22 Jul 2020 01:42:04 +0000
logol | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- phipack | 1 | {bio} |
plasmidseeker | 1 | {bio} |
q2templates | 1 | {bio} |
- rambo-k | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
sight | 1 | {imaging} |
stringtie | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
- velvetoptimiser | 1 | {bio} |
volpack | 1 | {imaging-dev} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
@@ -276,5 +277,5 @@ Last-Update: Wed, 22 Jul 2020 01:42:04 +0000
shovill | -1 | {bio,covid-19} |
sight | -1 | {imaging-dev} |
yanagiba | -1 | {bio,covid-19} |
-(303 rows)
+(304 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e2855152414fb9b82b60412f4a060649a3f555f7
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e2855152414fb9b82b60412f4a060649a3f555f7
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