Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
4bda2649 by Andreas Tille at 2020-07-23T13:44:16+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,196 +1,195 @@
-Last-Update: Thu, 23 Jul 2020 01:42:04 +0000
+Last-Update: Thu, 23 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging,covid-19} |
- orthanc | 90 | {practice,covid-19,imaging} |
- orthanc-wsi | 43 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 40 | {imaging-dev} |
- htsjdk | 31 | {bio-dev} |
- dicom3tools | 23 | {imaging} |
- dcm2niix | 22 | {imaging} |
+ dcmtk | 173 | {imaging,covid-19} |
+ orthanc | 92 | {practice,covid-19,imaging} |
+ orthanc-wsi | 44 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 37 | {imaging-dev} |
+ htsjdk | 30 | {bio-dev} |
+ dcm2niix | 23 | {imaging} |
+ dicom3tools | 22 | {imaging} |
dicomscope | 21 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
- ngs-sdk | 17 | {bio-dev} |
+ ngs-sdk | 16 | {bio-dev} |
gdcm | 15 | {covid-19,imaging} |
gdcm | 13 | {imaging-dev} |
- insighttoolkit4 | 13 | {imaging-dev} |
- ngs-sdk | 12 | {bio-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
invesalius | 11 | {imaging} |
- jebl2 | 11 | {bio-dev} |
- adun.app | 10 | {bio} |
+ ngs-sdk | 11 | {bio-dev} |
+ jebl2 | 10 | {bio-dev} |
pixelmed | 10 | {imaging} |
- lagan | 9 | {bio} |
- minc-tools | 9 | {imaging} |
- psychopy | 9 | {psychology} |
+ adun.app | 9 | {bio} |
vtk-dicom | 9 | {imaging} |
libdivsufsort | 8 | {bio-dev} |
- melting | 8 | {cloud,bio} |
+ minc-tools | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
- dicompyler | 7 | {oncology} |
+ psychopy | 8 | {psychology} |
king | 7 | {typesetting,imaging} |
+ lagan | 7 | {bio} |
+ melting | 7 | {cloud,bio} |
openslide | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
- paraclu | 7 | {bio,cloud} |
plastimatch | 7 | {imaging} |
- treeview | 7 | {bio,bio-phylogeny} |
bart-view | 6 | {imaging} |
- biomaj3-cli | 6 | {cloud} |
+ biojava-live | 6 | {bio-dev} |
biosig4c++ | 6 | {physics,imaging} |
- fastlink | 6 | {bio,cloud} |
+ dicompyler | 6 | {oncology} |
libminc | 6 | {imaging-dev} |
- librg-utils-perl | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
- phyutility | 6 | {bio,cloud} |
- rdp-readseq | 6 | {bio} |
- sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {bio,cloud,bio-phylogeny} |
- anfo | 5 | {cloud,bio} |
- biomaj3-daemon | 5 | {bio} |
- ea-utils | 5 | {bio} |
+ paraclu | 6 | {bio,cloud} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ biomaj3-cli | 5 | {cloud} |
elastix | 5 | {imaging} |
+ fastlink | 5 | {bio,cloud} |
getdata | 5 | {bio} |
- mauve-aligner | 5 | {bio} |
- mipe | 5 | {cloud,bio} |
- mlv-smile | 5 | {bio,cloud} |
- ncbi-seg | 5 | {bio} |
- neobio | 5 | {cloud,bio} |
+ librg-utils-perl | 5 | {bio} |
orthanc-postgresql | 5 | {imaging} |
- piler | 5 | {bio} |
+ phyutility | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
- rdp-alignment | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
- stacks | 5 | {bio} |
- transtermhp | 5 | {bio} |
- zalign | 5 | {cloud,bio} |
- alter-sequence-alignment | 4 | {bio} |
- daligner | 4 | {bio,bio-ngs} |
- ecopcr | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
- embassy-domsearch | 4 | {cloud,bio} |
- gatb-core | 4 | {bio} |
- ipig | 4 | {bio} |
+ rdp-readseq | 5 | {bio} |
+ sibsim4 | 5 | {bio,cloud} |
+ sigma-align | 5 | {bio,cloud,bio-phylogeny} |
+ anfo | 4 | {cloud,bio} |
+ biomaj3-daemon | 4 | {bio} |
+ ea-utils | 4 | {bio} |
king-probe | 4 | {bio} |
- libncl | 4 | {bio} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ mauve-aligner | 4 | {bio} |
mhap | 4 | {bio-ngs,bio} |
+ mipe | 4 | {cloud,bio} |
+ mlv-smile | 4 | {bio,cloud} |
mrs | 4 | {bio} |
+ neobio | 4 | {cloud,bio} |
nutsqlite | 4 | {tools} |
- perm | 4 | {cloud,bio} |
- predictprotein | 4 | {bio} |
- proalign | 4 | {bio,bio-phylogeny} |
- probabel | 4 | {bio,cloud} |
- rdp-classifier | 4 | {bio} |
- relion | 4 | {bio} |
- saint | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- scythe | 4 | {bio} |
- squizz | 4 | {bio,cloud} |
- staden | 4 | {bio} |
- ampliconnoise | 3 | {bio,cloud} |
- bandage | 3 | {bio} |
- beast2-mcmc | 3 | {bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
- bio-rainbow | 3 | {bio} |
- blasr | 3 | {bio-ngs,bio} |
+ piler | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
+ stacks | 4 | {bio} |
+ transtermhp | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
+ alter-sequence-alignment | 3 | {bio} |
brig | 3 | {bio} |
- busco | 3 | {bio,covid-19} |
- dascrubber | 3 | {bio} |
- dazzdb | 3 | {bio} |
- dindel | 3 | {bio} |
- edtsurf | 3 | {bio} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
- harvest-tools | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
- libpal-java | 3 | {bio-dev} |
+ daligner | 3 | {bio,bio-ngs} |
+ ecopcr | 3 | {bio} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {cloud,bio} |
+ gatb-core | 3 | {bio} |
+ ipig | 3 | {bio} |
+ libncl | 3 | {bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- maffilter | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
- microbegps | 3 | {bio} |
- multiqc | 3 | {bio,covid-19} |
+ ngs-sdk | 3 | {bio-dev} |
openslide | 3 | {imaging-dev} |
oscar | 3 | {data,practice,tools} |
- pbdagcon | 3 | {bio} |
- phybin | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
- repeatmasker-recon | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
+ perm | 3 | {cloud,bio} |
+ predictprotein | 3 | {bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
+ probabel | 3 | {bio,cloud} |
+ rdp-classifier | 3 | {bio} |
+ relion | 3 | {bio} |
runcircos-gui | 3 | {bio} |
- scrm | 3 | {bio} |
- seqmagick | 3 | {bio,covid-19} |
- sga | 3 | {bio} |
- sprai | 3 | {bio} |
- tnseq-transit | 3 | {bio,covid-19} |
- tracetuner | 3 | {bio} |
- tvc | 3 | {bio} |
+ saint | 3 | {bio} |
+ salmon | 3 | {covid-19,bio} |
+ scythe | 3 | {bio} |
+ squizz | 3 | {bio,cloud} |
+ staden | 3 | {bio} |
acedb | 2 | {cloud,bio} |
+ ampliconnoise | 2 | {bio,cloud} |
arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- baitfisher | 2 | {bio} |
- biosig4c++ | 2 | {physics,imaging-dev} |
- bio-tradis | 2 | {bio,bio-dev} |
- bitseq | 2 | {bio} |
- canu | 2 | {bio} |
- centrifuge | 2 | {covid-19,bio} |
- clonalframeml | 2 | {bio,covid-19} |
- clonalorigin | 2 | {bio} |
- delly | 2 | {covid-19,bio} |
- estscan | 2 | {bio} |
- ghmm | 2 | {bio} |
- hinge | 2 | {bio} |
+ bandage | 2 | {bio} |
+ beast2-mcmc | 2 | {bio} |
+ beast-mcmc | 2 | {bio,bio-phylogeny} |
+ bio-rainbow | 2 | {bio} |
+ blasr | 2 | {bio-ngs,bio} |
+ busco | 2 | {bio,covid-19} |
+ dascrubber | 2 | {bio} |
+ dazzdb | 2 | {bio} |
+ dindel | 2 | {bio} |
+ edtsurf | 2 | {bio} |
+ fastml | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
+ harvest-tools | 2 | {bio} |
jellyfish1 | 2 | {bio} |
- lamarc | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
libctapimkt | 2 | {practice} |
- murasaki | 2 | {bio} |
- ngs-sdk | 2 | {bio-dev} |
- patman | 2 | {bio} |
- phast | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
+ maffilter | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
+ microbegps | 2 | {bio} |
+ multiqc | 2 | {bio,covid-19} |
+ pbdagcon | 2 | {bio} |
phipack | 2 | {bio} |
- placnet | 2 | {bio} |
- prottest | 2 | {bio,bio-phylogeny} |
- pscan-chip | 2 | {bio} |
+ phybin | 2 | {bio} |
+ prime-phylo | 2 | {cloud,bio} |
pscan-tfbs | 2 | {bio} |
- qcumber | 2 | {bio} |
- quorum | 2 | {bio} |
- radiant | 2 | {bio} |
rambo-k | 2 | {bio} |
- rampler | 2 | {bio} |
- roguenarok | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ repeatmasker-recon | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
samtools-legacy | 2 | {bio-dev} |
- segemehl | 2 | {bio} |
- seqsero | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- spaced | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
- sweed | 2 | {bio} |
- velvetoptimiser | 2 | {bio} |
- yaha | 2 | {bio} |
+ scrm | 2 | {bio} |
+ seqmagick | 2 | {bio,covid-19} |
+ sga | 2 | {bio} |
+ sprai | 2 | {bio} |
+ tnseq-transit | 2 | {bio,covid-19} |
+ tracetuner | 2 | {bio} |
+ tvc | 2 | {bio} |
+ assemblytics | 1 | {bio} |
+ baitfisher | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
+ bio-tradis | 1 | {bio,bio-dev} |
+ bitseq | 1 | {bio} |
blimps | 1 | {bio} |
+ canu | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
+ centrifuge | 1 | {covid-19,bio} |
+ clonalframeml | 1 | {bio,covid-19} |
+ clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
+ delly | 1 | {covid-19,bio} |
embassy-phylip | 1 | {cloud,bio} |
+ estscan | 1 | {bio} |
+ ghmm | 1 | {bio} |
+ hinge | 1 | {bio} |
+ kma | 1 | {bio} |
+ lamarc | 1 | {bio} |
libdisorder | 1 | {bio-dev} |
libhmsbeagle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
+ murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
+ patman | 1 | {bio} |
+ phast | 1 | {bio} |
+ placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
+ prottest | 1 | {bio,bio-phylogeny} |
+ pscan-chip | 1 | {bio} |
q2templates | 1 | {bio} |
+ qcumber | 1 | {bio} |
+ quorum | 1 | {bio} |
+ radiant | 1 | {bio} |
+ rampler | 1 | {bio} |
+ roguenarok | 1 | {bio} |
+ samblaster | 1 | {covid-19,bio} |
+ segemehl | 1 | {bio} |
seqan | 1 | {bio-dev} |
+ seqsero | 1 | {bio} |
sift | 1 | {bio} |
sight | 1 | {imaging} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ spaced | 1 | {bio} |
stringtie | 1 | {bio,covid-19} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
+ sweed | 1 | {bio} |
trace2dbest | 1 | {bio} |
+ velvetoptimiser | 1 | {bio} |
volpack | 1 | {imaging-dev} |
+ yaha | 1 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -201,12 +200,13 @@ Last-Update: Thu, 23 Jul 2020 01:42:04 +0000
camp | 0 | {imaging-dev} |
conda-package-handling | 0 | {bio-dev,bio} |
cufflinks | 0 | {bio,cloud} |
+ dextractor | 0 | {bio,covid-19} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
- kma | 0 | {bio} |
+ intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -241,7 +241,6 @@ Last-Update: Thu, 23 Jul 2020 01:42:04 +0000
milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
murasaki | 0 | {bio} |
- nanosv | 0 | {bio,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -269,13 +268,12 @@ Last-Update: Thu, 23 Jul 2020 01:42:04 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio,covid-19} |
- dextractor | -1 | {bio,covid-19} |
- intake | -1 | {bio-dev,bio} |
+ nanosv | -1 | {bio,covid-19} |
orthanc-python | -1 | {covid-19} |
pplacer | -1 | {covid-19,bio,bio-phylogeny} |
pycoqc | -1 | {bio,covid-19} |
shovill | -1 | {bio,covid-19} |
sight | -1 | {imaging-dev} |
yanagiba | -1 | {bio,covid-19} |
-(304 rows)
+(302 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4bda264917851f40490e169285cac84259a5a92f
--
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