[med-svn] [Git][med-team/libsmithwaterman][master] 5 commits: Try fixing symbols but there are more diffs
Andreas Tille
gitlab at salsa.debian.org
Thu Jul 23 16:10:55 BST 2020
Andreas Tille pushed to branch master at Debian Med / libsmithwaterman
Commits:
454ed40e by Andreas Tille at 2020-07-23T15:49:37+02:00
Try fixing symbols but there are more diffs
- - - - -
c71ef4cb by Andreas Tille at 2020-07-23T15:56:40+02:00
Manually applied fix since patch did not applied
- - - - -
783fe28d by Andreas Tille at 2020-07-23T15:57:18+02:00
routine-update: debhelper-compat 13
- - - - -
f9af4f73 by Andreas Tille at 2020-07-23T16:00:29+02:00
Remove libsmithwaterman.la from build to make dh_missing happy
- - - - -
ab6a2445 by Andreas Tille at 2020-07-23T16:02:01+02:00
Upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/libsmithwaterman0.symbols
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+libsmithwaterman (0.0+git20160702.2610e25-9) unstable; urgency=medium
+
+ * Update symbols for gcc-10
+ Closes: #957476
+ * debhelper-compat 13 (routine-update)
+ * Remove libsmithwaterman.la from build to make dh_missing happy
+
+ -- Andreas Tille <tille at debian.org> Thu, 23 Jul 2020 16:00:43 +0200
+
libsmithwaterman (0.0+git20160702.2610e25-8) unstable; urgency=medium
[ Pranav Ballaney ]
=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
d-shlibs,
libdisorder-dev
Standards-Version: 4.5.0
=====================================
debian/libsmithwaterman0.symbols
=====================================
@@ -48,12 +48,15 @@ libsmithwaterman.so.0 libsmithwaterman0 #MINVER#
_ZN20CBandedSmithWatermanD1Ev at Base 0.0+git20160702.2610e25
_ZN20CBandedSmithWatermanD2Ev at Base 0.0+git20160702.2610e25
(optional)_ZNKSt5ctypeIcE8do_widenEc at Base 0.0+git20160702.2610e25
+ _ZNSt12_Vector_baseIfSaIfEED1Ev at Base 0.0+git20160702.2610e25
+ _ZNSt12_Vector_baseIfSaIfEED2Ev at Base 0.0+git20160702.2610e25
+ _ZNSt15_Rb_tree_headerC1EOS_ at Base 0.0+git20160702.2610e25
+ _ZNSt15_Rb_tree_headerC2EOS_ at Base 0.0+git20160702.2610e25
(optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_ at Base 0.0+git20160702.2610e25
_ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.2610e25
(optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.2610e25
_ZNSt6vectorI11IndelAlleleSaIS0_EED1Ev at Base 0.0+git20160702.2610e25
_ZNSt6vectorI11IndelAlleleSaIS0_EED2Ev at Base 0.0+git20160702.2610e25
- (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE12emplace_backIJSD_EEEvDpOT_ at Base 0.0+git20160702.2610e25
(optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_ at Base 0.0+git20160702.2610e25
_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED1Ev at Base 0.0+git20160702.2610e25
_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED2Ev at Base 0.0+git20160702.2610e25
@@ -62,19 +65,12 @@ libsmithwaterman.so.0 libsmithwaterman0 #MINVER#
(optional)_ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_ at Base 0.0+git20160702.2610e25
_ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED1Ev at Base 0.0+git20160702.2610e25
_ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED2Ev at Base 0.0+git20160702.2610e25
- (optional)_ZNSt6vectorIfSaIfEE12emplace_backIJfEEEvDpOT_ at Base 0.0+git20160702.2610e25
(optional)_ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_ at Base 0.0+git20160702.2610e25
- (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag at Base 0.0+git20160702.2610e25
- (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag at Base 0.0+git20160702.2610e25
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev at Base 0.0+git20160702.2610e25
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev at Base 0.0+git20160702.2610e25
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev at Base 0.0+git20160702.2610e25
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS8_E at Base 0.0+git20160702.2610e25
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_ at Base 0.0+git20160702.2610e25
(optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_ at Base 0.0+git20160702.2610e25
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_ at Base 0.0+git20160702.2610e25
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E at Base 0.0+git20160702.2610e25
- (optional)_ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_ at Base 0.0+git20160702.2610e25
_ZeqRK11IndelAlleleS1_ at Base 0.0+git20160702.2610e25
_ZlsRSoRK11IndelAllele at Base 0.0+git20160702.2610e25
_ZltRK11IndelAlleleS1_ at Base 0.0+git20160702.2610e25
=====================================
debian/rules
=====================================
@@ -16,3 +16,4 @@ override_dh_install:
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
debian/tmp/usr/lib/*/*.so
+ find debian -name libsmithwaterman.la -delete
View it on GitLab: https://salsa.debian.org/med-team/libsmithwaterman/-/compare/6f2843ca198094e86953c98a0b3a2113e7a4f0f8...ab6a244532dce74540069bb5dcf04ab6ce1d9fe1
--
View it on GitLab: https://salsa.debian.org/med-team/libsmithwaterman/-/compare/6f2843ca198094e86953c98a0b3a2113e7a4f0f8...ab6a244532dce74540069bb5dcf04ab6ce1d9fe1
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