[med-svn] [Git][med-team/mlv-smile][master] 6 commits: Drop compat, switch to debhelper compat version 13

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / mlv-smile


Commits:
5d055f1e by Nilesh Patra at 2020-07-23T20:49:55+05:30
Drop compat, switch to debhelper compat version 13

- - - - -
6be835ca by Nilesh Patra at 2020-07-23T20:57:47+05:30
Fix national encoding

- - - - -
c2a93343 by Nilesh Patra at 2020-07-23T20:58:24+05:30
Add "Rules-Requires-Root:no"

- - - - -
46c74c12 by Nilesh Patra at 2020-07-23T21:00:14+05:30
Fix whitespaces

- - - - -
b289f700 by Nilesh Patra at 2020-07-23T15:33:36+00:00
Migrate to https in upstream/metadata

- - - - -
5e484f01 by Nilesh Patra at 2020-07-23T21:07:27+05:30
Bump standards version to 4.5.0

- - - - -


7 changed files:

- debian/changelog
- − debian/compat
- debian/control
- + debian/patches/replace-national-encoding-with-UTF8.patch
- debian/patches/series
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -53,7 +53,7 @@ mlv-smile (1.47-2) unstable; urgency=low
 mlv-smile (1.47-1) unstable; urgency=low
 
   * initial Release (Closes: #221492).
-  * renamed package to mlv-smile 
+  * renamed package to mlv-smile
   * Lintian clean
   * already prepared patches from Steffen Moeller applied
   * debian/source/format added
@@ -79,4 +79,3 @@ mlv-smile (1.46-1) UNRELEASED; urgency=low
   * Upstream author contributed man page.
 
  -- Steffen Moeller <moeller at pzr.uni-rostock.de>  Tue, 18 Nov 2003 16:20:05 +0100
-


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -5,11 +5,12 @@ Uploaders: Steffen Moeller <moeller at debian.org>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.2.1
+Build-Depends: debhelper-compat (= 13)
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/mlv-smile
 Vcs-Git: https://salsa.debian.org/med-team/mlv-smile.git
 Homepage: http://www-igm.univ-mlv.fr/~marsan/smile_english.html
+Rules-Requires-Root: no
 
 Package: mlv-smile
 Architecture: any


=====================================
debian/patches/replace-national-encoding-with-UTF8.patch
=====================================
@@ -0,0 +1,12 @@
+Author: Nilesh Patra <npatra974 at gmail.com>
+Description: Fix national encoding - use UTF-8 instead.
+Last-Updated: July 23, 2020
+
+--- a/Lanceur/DocFrancais/param_exemple
++++ b/Lanceur/DocFrancais/param_exemple
+@@ -1,4 +1,4 @@
+-## Fichier de parametre commenté
++## Fichier de parametre commenté
+ 
+ ## Ici on cherche a extraire un modele de la forme XXXXXX___XXXX apparaissant
+ ## dans au moins 5% des sequences, avec une erreur autorisee dans un des deux


=====================================
debian/patches/series
=====================================
@@ -3,3 +3,4 @@ although.patch
 misc.patch
 mayhem.patch
 fix-gcc-10.patch
+replace-national-encoding-with-UTF8.patch


=====================================
debian/rules
=====================================
@@ -27,5 +27,4 @@ override_dh_auto_install:
                 sed "s/smile/mlv-smile/g"|\
                 sed "s/Smile/mlv-smile/g" > mlv-smile.1
 	dh_installchangelogs READ_ME
-	dh_auto_install 
-
+	dh_auto_install


=====================================
debian/upstream/metadata
=====================================
@@ -10,7 +10,7 @@ Reference:
    Pages: 345-362
    DOI: 10.1089/106652700750050826
    PMID: 11108467
-   URL: http://online.liebertpub.com/doi/abs/10.1089/106652700750050826
+   URL: https://online.liebertpub.com/doi/abs/10.1089/106652700750050826
    eprint: http://online.liebertpub.com/doi/pdfplus/10.1089/106652700750050826
  - Author: A. Vanet and L. Marsan and M.-F. Sagot
    Title: Promoter sequences and algorithmical methods for identifying them
@@ -21,7 +21,7 @@ Reference:
    Pages: 779-799
    DOI: 10.1016/S0923-2508(99)00115-1
    PMID: 10673015
-   URL: http://www.sciencedirect.com/science/article/pii/S0923250899001151
+   URL: https://www.sciencedirect.com/science/article/pii/S0923250899001151
  - Author: A. Vanet and L. Marsan and A. Labigne and M.-F. Sagot
    Title: >
     Inferring regulatory elements from a whole genome. An analysis of
@@ -33,7 +33,7 @@ Reference:
    Pages: 335-353
    DOI: 10.1006/jmbi.2000.3576
    PMID: 10715205
-   URL: http://www.sciencedirect.com/science/article/pii/S0022283600935769
+   URL: https://www.sciencedirect.com/science/article/pii/S0022283600935769
  - Author: D. Arquès and J.-P. Fallot and L. Marsan and C. Michel
    Title: An evolutionary analytical model of a complementary circular code
    Journal: Biosystems



View it on GitLab: https://salsa.debian.org/med-team/mlv-smile/-/compare/4ce4a79f5fdfcca95952125d792972e4738ab96e...5e484f01e88b60eb49719fff2c1640be0edb3ca9

-- 
View it on GitLab: https://salsa.debian.org/med-team/mlv-smile/-/compare/4ce4a79f5fdfcca95952125d792972e4738ab96e...5e484f01e88b60eb49719fff2c1640be0edb3ca9
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