Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ee2eb4e8 by Andreas Tille at 2020-07-24T13:44:24+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,49 +1,46 @@
-Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
+Last-Update: Fri, 24 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 173 | {imaging,covid-19} |
orthanc | 92 | {practice,covid-19,imaging} |
orthanc-wsi | 44 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 37 | {imaging-dev} |
- htsjdk | 30 | {bio-dev} |
+ gdcm | 36 | {imaging-dev} |
+ htsjdk | 27 | {bio-dev} |
dcm2niix | 23 | {imaging} |
dicom3tools | 22 | {imaging} |
dicomscope | 21 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
- ngs-sdk | 16 | {bio-dev} |
gdcm | 15 | {covid-19,imaging} |
+ ngs-sdk | 14 | {bio-dev} |
gdcm | 13 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
+ insighttoolkit4 | 13 | {imaging-dev} |
invesalius | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- jebl2 | 10 | {bio-dev} |
pixelmed | 10 | {imaging} |
adun.app | 9 | {bio} |
vtk-dicom | 9 | {imaging} |
- libdivsufsort | 8 | {bio-dev} |
minc-tools | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
psychopy | 8 | {psychology} |
king | 7 | {typesetting,imaging} |
- lagan | 7 | {bio} |
melting | 7 | {cloud,bio} |
openslide | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
plastimatch | 7 | {imaging} |
bart-view | 6 | {imaging} |
biojava-live | 6 | {bio-dev} |
- biosig4c++ | 6 | {physics,imaging} |
dicompyler | 6 | {oncology} |
+ jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
- paraclu | 6 | {bio,cloud} |
- treeview | 6 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
+ biosig4c++ | 5 | {physics,imaging} |
elastix | 5 | {imaging} |
fastlink | 5 | {bio,cloud} |
- getdata | 5 | {bio} |
+ lagan | 5 | {bio} |
+ libdivsufsort | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
orthanc-postgresql | 5 | {imaging} |
phyutility | 5 | {bio,cloud} |
@@ -51,14 +48,13 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
rdp-readseq | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
sigma-align | 5 | {bio,cloud,bio-phylogeny} |
- anfo | 4 | {cloud,bio} |
biomaj3-daemon | 4 | {bio} |
ea-utils | 4 | {bio} |
king-probe | 4 | {bio} |
+ libsbml | 4 | {bio-dev} |
mauve-aligner | 4 | {bio} |
mhap | 4 | {bio-ngs,bio} |
mipe | 4 | {cloud,bio} |
- mlv-smile | 4 | {bio,cloud} |
mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
nutsqlite | 4 | {tools} |
@@ -67,8 +63,8 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
spread-phy | 4 | {bio-phylogeny,bio} |
stacks | 4 | {bio} |
transtermhp | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
alter-sequence-alignment | 3 | {bio} |
+ anfo | 3 | {cloud,bio} |
brig | 3 | {bio} |
daligner | 3 | {bio,bio-ngs} |
ecopcr | 3 | {bio} |
@@ -79,10 +75,9 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
ipig | 3 | {bio} |
libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
- libsbml | 3 | {bio-dev} |
- ngs-sdk | 3 | {bio-dev} |
openslide | 3 | {imaging-dev} |
oscar | 3 | {data,practice,tools} |
+ paraclu | 3 | {bio,cloud} |
perm | 3 | {cloud,bio} |
predictprotein | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
@@ -95,10 +90,10 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
scythe | 3 | {bio} |
squizz | 3 | {bio,cloud} |
staden | 3 | {bio} |
+ treeview | 3 | {bio,bio-phylogeny} |
acedb | 2 | {cloud,bio} |
ampliconnoise | 2 | {bio,cloud} |
arden | 2 | {cloud,bio} |
- bandage | 2 | {bio} |
beast2-mcmc | 2 | {bio} |
beast-mcmc | 2 | {bio,bio-phylogeny} |
bio-rainbow | 2 | {bio} |
@@ -110,6 +105,7 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
edtsurf | 2 | {bio} |
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
+ getdata | 2 | {bio} |
harvest-tools | 2 | {bio} |
jellyfish1 | 2 | {bio} |
jmodeltest | 2 | {bio-phylogeny,bio} |
@@ -119,6 +115,7 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
metaphlan2 | 2 | {bio} |
microbegps | 2 | {bio} |
multiqc | 2 | {bio,covid-19} |
+ ngs-sdk | 2 | {bio-dev} |
pbdagcon | 2 | {bio} |
phipack | 2 | {bio} |
phybin | 2 | {bio} |
@@ -137,10 +134,10 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
tvc | 2 | {bio} |
assemblytics | 1 | {bio} |
baitfisher | 1 | {bio} |
+ bandage | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
bio-tradis | 1 | {bio,bio-dev} |
bitseq | 1 | {bio} |
- blimps | 1 | {bio} |
canu | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
centrifuge | 1 | {covid-19,bio} |
@@ -154,10 +151,10 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
hinge | 1 | {bio} |
kma | 1 | {bio} |
lamarc | 1 | {bio} |
- libdisorder | 1 | {bio-dev} |
libhmsbeagle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
+ mlv-smile | 1 | {bio,cloud} |
murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
@@ -177,11 +174,11 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
segemehl | 1 | {bio} |
seqan | 1 | {bio-dev} |
seqsero | 1 | {bio} |
- sift | 1 | {bio} |
sight | 1 | {imaging} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
spaced | 1 | {bio} |
+ srf | 1 | {bio-dev} |
stringtie | 1 | {bio,covid-19} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
@@ -190,6 +187,7 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
velvetoptimiser | 1 | {bio} |
volpack | 1 | {imaging-dev} |
yaha | 1 | {bio} |
+ zalign | 1 | {cloud,bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -197,6 +195,7 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
+ blimps | 0 | {bio} |
camp | 0 | {imaging-dev} |
conda-package-handling | 0 | {bio-dev,bio} |
cufflinks | 0 | {bio,cloud} |
@@ -220,6 +219,7 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
libchado-perl | 0 | {bio-dev} |
+ libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
@@ -254,12 +254,12 @@ Last-Update: Fri, 24 Jul 2020 01:42:03 +0000
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
+ sift | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {covid-19,bio} |
- srf | 0 | {bio-dev} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ee2eb4e847079bdf889f8cade421a18434c507fa
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ee2eb4e847079bdf889f8cade421a18434c507fa
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