Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
54b0379e by Andreas Tille at 2020-07-28T13:44:15+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,194 +1,198 @@
-Last-Update: Tue, 28 Jul 2020 01:42:03 +0000
+Last-Update: Tue, 28 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19} |
- orthanc | 95 | {practice,covid-19,imaging} |
- orthanc-wsi | 45 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 34 | {imaging-dev} |
- htsjdk | 25 | {bio-dev} |
+ dcmtk | 175 | {imaging,covid-19} |
+ orthanc | 94 | {practice,covid-19,imaging} |
+ orthanc-wsi | 44 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 33 | {imaging-dev} |
+ htsjdk | 26 | {bio-dev} |
dicom3tools | 21 | {imaging} |
dicomscope | 20 | {imaging} |
+ gnumed-server | 19 | {covid-19,practice} |
dcm2niix | 18 | {imaging} |
- gnumed-server | 18 | {covid-19,practice} |
gdcm | 15 | {covid-19,imaging} |
ngs-sdk | 14 | {bio-dev} |
- gdcm | 12 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
- ngs-sdk | 10 | {bio-dev} |
+ gdcm | 11 | {imaging-dev} |
+ insighttoolkit4 | 10 | {imaging-dev} |
adun.app | 9 | {bio} |
invesalius | 9 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
+ psychopy | 9 | {psychology} |
melting | 8 | {cloud,bio} |
orthanc-webviewer | 8 | {imaging} |
pixelmed | 8 | {imaging} |
- psychopy | 8 | {psychology} |
biojava-live | 7 | {bio-dev} |
+ fastlink | 7 | {bio,cloud} |
jebl2 | 7 | {bio-dev} |
minc-tools | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
+ phyutility | 7 | {bio,cloud} |
+ sibsim4 | 7 | {bio,cloud} |
+ sigma-align | 7 | {bio,cloud,bio-phylogeny} |
bart-view | 6 | {imaging} |
- fastlink | 6 | {bio,cloud} |
- libminc | 6 | {imaging-dev} |
+ lagan | 6 | {bio} |
+ libdivsufsort | 6 | {bio-dev} |
librg-utils-perl | 6 | {bio} |
+ mipe | 6 | {cloud,bio} |
+ obitools | 6 | {bio} |
openslide | 6 | {imaging} |
orthanc-mysql | 6 | {imaging} |
- phyutility | 6 | {bio,cloud} |
- sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {bio,cloud,bio-phylogeny} |
+ piler | 6 | {bio} |
+ stacks | 6 | {bio} |
vtk-dicom | 6 | {imaging} |
+ anfo | 5 | {cloud,bio} |
biomaj3-cli | 5 | {cloud} |
+ daligner | 5 | {bio,bio-ngs} |
ea-utils | 5 | {bio} |
+ ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ gatb-core | 5 | {bio} |
king | 5 | {typesetting,imaging} |
- lagan | 5 | {bio} |
- libdivsufsort | 5 | {bio-dev} |
+ king-probe | 5 | {bio} |
+ libncl | 5 | {bio} |
mauve-aligner | 5 | {bio} |
- mipe | 5 | {cloud,bio} |
neobio | 5 | {cloud,bio} |
- obitools | 5 | {bio} |
orthanc-postgresql | 5 | {imaging} |
- piler | 5 | {bio} |
+ paraclu | 5 | {bio,cloud} |
+ perm | 5 | {cloud,bio} |
plastimatch | 5 | {imaging} |
+ probabel | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
rdp-readseq | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
+ scythe | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- stacks | 5 | {bio} |
+ squizz | 5 | {bio,cloud} |
+ staden | 5 | {bio} |
+ transtermhp | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
- anfo | 4 | {cloud,bio} |
biomaj3-daemon | 4 | {bio} |
+ bio-rainbow | 4 | {bio} |
biosig4c++ | 4 | {physics,imaging} |
- daligner | 4 | {bio,bio-ngs} |
+ dascrubber | 4 | {bio} |
+ dazzdb | 4 | {bio} |
dicompyler | 4 | {oncology} |
- ecopcr | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
- embassy-domsearch | 4 | {cloud,bio} |
- gatb-core | 4 | {bio} |
+ dindel | 4 | {bio} |
+ edtsurf | 4 | {bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
- king-probe | 4 | {bio} |
- libncl | 4 | {bio} |
+ libminc | 4 | {imaging-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ maffilter | 4 | {bio} |
mrs | 4 | {bio} |
nutsqlite | 4 | {tools} |
- paraclu | 4 | {bio,cloud} |
- perm | 4 | {cloud,bio} |
+ phybin | 4 | {bio} |
predictprotein | 4 | {bio} |
proalign | 4 | {bio,bio-phylogeny} |
- probabel | 4 | {bio,cloud} |
rdp-alignment | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- scythe | 4 | {bio} |
- squizz | 4 | {bio,cloud} |
- staden | 4 | {bio} |
- transtermhp | 4 | {bio} |
+ repeatmasker-recon | 4 | {bio} |
+ rtax | 4 | {cloud,bio} |
+ scrm | 4 | {bio} |
+ sprai | 4 | {bio} |
+ tracetuner | 4 | {bio} |
treeview | 4 | {bio,bio-phylogeny} |
ampliconnoise | 3 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
+ baitfisher | 3 | {bio} |
+ bandage | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
- bio-rainbow | 3 | {bio} |
+ bitseq | 3 | {bio} |
blasr | 3 | {bio-ngs,bio} |
- dascrubber | 3 | {bio} |
- dazzdb | 3 | {bio} |
- dindel | 3 | {bio} |
- edtsurf | 3 | {bio} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
- ghmm | 3 | {bio} |
- harvest-tools | 3 | {bio} |
+ centrifuge | 3 | {covid-19,bio} |
+ clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
+ estscan | 3 | {bio} |
+ hinge | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
+ lamarc | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
oscar | 3 | {data,practice,tools} |
+ patman | 3 | {bio} |
pbdagcon | 3 | {bio} |
- phybin | 3 | {bio} |
+ phast | 3 | {bio} |
+ phipack | 3 | {bio} |
+ placnet | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
- repeatmasker-recon | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- scrm | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ pscan-tfbs | 3 | {bio} |
+ quorum | 3 | {bio} |
+ radiant | 3 | {bio} |
+ rampler | 3 | {bio} |
+ samblaster | 3 | {covid-19,bio} |
+ segemehl | 3 | {bio} |
seqmagick | 3 | {bio,covid-19} |
+ seqsero | 3 | {bio} |
sga | 3 | {bio} |
- sprai | 3 | {bio} |
- tracetuner | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ spaced | 3 | {bio} |
+ suitename | 3 | {bio} |
+ sweed | 3 | {bio} |
+ tnseq-transit | 3 | {bio,covid-19} |
tvc | 3 | {bio} |
+ velvetoptimiser | 3 | {bio} |
+ yaha | 3 | {bio} |
acedb | 2 | {cloud,bio} |
arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- baitfisher | 2 | {bio} |
- bandage | 2 | {bio} |
bio-tradis | 2 | {bio,bio-dev} |
- bitseq | 2 | {bio} |
brig | 2 | {bio} |
busco | 2 | {bio,covid-19} |
canu | 2 | {bio} |
- centrifuge | 2 | {covid-19,bio} |
- clonalframeml | 2 | {bio,covid-19} |
- clonalorigin | 2 | {bio} |
- delly | 2 | {covid-19,bio} |
- estscan | 2 | {bio} |
getdata | 2 | {bio} |
- hinge | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
- lamarc | 2 | {bio} |
+ kma | 2 | {bio} |
libctapimkt | 2 | {practice} |
multiqc | 2 | {bio,covid-19} |
murasaki | 2 | {bio} |
openslide | 2 | {imaging-dev} |
- patman | 2 | {bio} |
- phast | 2 | {bio} |
- phipack | 2 | {bio} |
- placnet | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
prottest | 2 | {bio,bio-phylogeny} |
- pscan-chip | 2 | {bio} |
- pscan-tfbs | 2 | {bio} |
qcumber | 2 | {bio} |
- quorum | 2 | {bio} |
- radiant | 2 | {bio} |
rambo-k | 2 | {bio} |
- rampler | 2 | {bio} |
- roguenarok | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
- segemehl | 2 | {bio} |
- seqsero | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- spaced | 2 | {bio} |
- suitename | 2 | {bio} |
+ stringtie | 2 | {bio,covid-19} |
surankco | 2 | {bio} |
- sweed | 2 | {bio} |
- tnseq-transit | 2 | {bio,covid-19} |
- velvetoptimiser | 2 | {bio} |
- yaha | 2 | {bio} |
zalign | 2 | {cloud,bio} |
+ atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
embassy-phylip | 1 | {cloud,bio} |
- kma | 1 | {bio} |
+ emmax | 1 | {bio} |
+ kmerresistance | 1 | {bio} |
libhmsbeagle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- plasmidseeker | 1 | {bio} |
+ pilercr | 1 | {bio} |
q2templates | 1 | {bio} |
+ relion | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
sight | 1 | {imaging} |
+ skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
- stringtie | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
volpack | 1 | {imaging-dev} |
- atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
bbmap | 0 | {covid-19,bio} |
@@ -201,12 +205,10 @@ Last-Update: Tue, 28 Jul 2020 01:42:03 +0000
cufflinks | 0 | {bio,cloud} |
dextractor | 0 | {bio,covid-19} |
emboss-explorer | 0 | {bio} |
- emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
- kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -247,15 +249,13 @@ Last-Update: Tue, 28 Jul 2020 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pilercr | 0 | {bio} |
quicktree | 0 | {covid-19,bio-phylogeny,bio} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
- skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/54b0379e8ceeaa4bc2d4be24067a8e2e815f49ad
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/54b0379e8ceeaa4bc2d4be24067a8e2e815f49ad
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