Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d307334b by Andreas Tille at 2020-07-30T13:44:43+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,38 +1,37 @@
-Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
+Last-Update: Thu, 30 Jul 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {imaging,covid-19} |
- orthanc | 92 | {practice,covid-19,imaging} |
+ dcmtk | 169 | {imaging,covid-19} |
+ orthanc | 90 | {practice,covid-19,imaging} |
orthanc-wsi | 44 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 34 | {imaging-dev} |
+ gdcm | 37 | {imaging-dev} |
htsjdk | 26 | {bio-dev} |
dicom3tools | 23 | {imaging} |
- dicomscope | 20 | {imaging} |
dcm2niix | 19 | {imaging} |
+ dicomscope | 19 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
gdcm | 16 | {covid-19,imaging} |
ngs-sdk | 14 | {bio-dev} |
- gdcm | 12 | {imaging-dev} |
+ gdcm | 13 | {imaging-dev} |
insighttoolkit4 | 10 | {imaging-dev} |
invesalius | 10 | {imaging} |
- ngs-sdk | 10 | {bio-dev} |
adun.app | 9 | {bio} |
- psychopy | 9 | {psychology} |
+ ngs-sdk | 9 | {bio-dev} |
melting | 8 | {cloud,bio} |
minc-tools | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
- pixelmed | 8 | {imaging} |
+ psychopy | 8 | {psychology} |
biojava-live | 7 | {bio-dev} |
fastlink | 7 | {bio,cloud} |
jebl2 | 7 | {bio-dev} |
openslide | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
phyutility | 7 | {bio,cloud} |
+ pixelmed | 7 | {imaging} |
sibsim4 | 7 | {bio,cloud} |
sigma-align | 7 | {bio,cloud,bio-phylogeny} |
bart-view | 6 | {imaging} |
- lagan | 6 | {bio} |
libdivsufsort | 6 | {bio-dev} |
librg-utils-perl | 6 | {bio} |
mipe | 6 | {cloud,bio} |
@@ -40,19 +39,16 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
orthanc-mysql | 6 | {imaging} |
piler | 6 | {bio} |
stacks | 6 | {bio} |
- vtk-dicom | 6 | {imaging} |
anfo | 5 | {cloud,bio} |
biomaj3-cli | 5 | {cloud} |
daligner | 5 | {bio,bio-ngs} |
- ea-utils | 5 | {bio} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domalign | 5 | {cloud,bio} |
embassy-domsearch | 5 | {cloud,bio} |
- gatb-core | 5 | {bio} |
king | 5 | {typesetting,imaging} |
- libncl | 5 | {bio} |
+ lagan | 5 | {bio} |
mauve-aligner | 5 | {bio} |
neobio | 5 | {cloud,bio} |
orthanc-postgresql | 5 | {imaging} |
@@ -69,6 +65,7 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
squizz | 5 | {bio,cloud} |
staden | 5 | {bio} |
transtermhp | 5 | {bio} |
+ vtk-dicom | 5 | {imaging} |
alter-sequence-alignment | 4 | {bio} |
biomaj3-daemon | 4 | {bio} |
bio-rainbow | 4 | {bio} |
@@ -76,13 +73,16 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
dascrubber | 4 | {bio} |
dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
+ ea-utils | 4 | {bio} |
edtsurf | 4 | {bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
+ gatb-core | 4 | {bio} |
ghmm | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
libminc | 4 | {imaging-dev} |
+ libncl | 4 | {bio} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
phybin | 4 | {bio} |
@@ -123,6 +123,7 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
microbegps | 3 | {bio} |
mrs | 3 | {bio} |
nutsqlite | 3 | {tools} |
+ openslide | 3 | {imaging-dev} |
oscar | 3 | {data,practice,tools} |
patman | 3 | {bio} |
pbdagcon | 3 | {bio} |
@@ -159,7 +160,6 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
libctapimkt | 2 | {practice} |
multiqc | 2 | {bio,covid-19} |
murasaki | 2 | {bio} |
- openslide | 2 | {imaging-dev} |
plasmidseeker | 2 | {bio} |
prottest | 2 | {bio,bio-phylogeny} |
qcumber | 2 | {bio} |
@@ -186,11 +186,10 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
- sight | 1 | {imaging} |
+ simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
trace2dbest | 1 | {bio} |
- volpack | 1 | {imaging-dev} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
bbmap | 0 | {covid-19,bio} |
@@ -248,11 +247,12 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
quicktree | 0 | {covid-19,bio-phylogeny,bio} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
+ sight | 0 | {imaging} |
simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
@@ -262,6 +262,7 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {covid-19,bio} |
+ volpack | 0 | {imaging-dev} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio,covid-19} |
@@ -272,5 +273,5 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
shovill | -1 | {bio,covid-19} |
sight | -1 | {imaging-dev} |
yanagiba | -1 | {bio,covid-19} |
-(299 rows)
+(300 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d307334b7844357e842a4669737b229fe2b6c6d5
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d307334b7844357e842a4669737b229fe2b6c6d5
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