Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
679096e2 by Andreas Tille at 2020-06-02T13:45:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,230 +1,228 @@
-Last-Update: Tue, 02 Jun 2020 01:42:04 +0000
+Last-Update: Tue, 02 Jun 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 190 | {covid-19,imaging} |
- orthanc | 94 | {imaging,covid-19,practice} |
- gdcm | 59 | {imaging-dev} |
+ dcmtk | 192 | {covid-19,imaging} |
+ orthanc | 95 | {imaging,covid-19,practice} |
+ gdcm | 56 | {imaging-dev} |
orthanc-wsi | 45 | {imaging,laboratory,practice,covid-19,his,oncology} |
htsjdk | 33 | {bio-dev} |
dicom3tools | 30 | {imaging} |
- dicomscope | 29 | {imaging} |
dcm2niix | 28 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
- insighttoolkit4 | 19 | {imaging-dev} |
+ dicomscope | 28 | {imaging} |
+ gdcm | 19 | {covid-19,imaging} |
minc-tools | 18 | {imaging} |
gnumed-server | 17 | {covid-19,practice} |
- invesalius | 16 | {imaging} |
- vtk-dicom | 16 | {imaging} |
- pixelmed | 15 | {imaging} |
- king | 14 | {imaging,typesetting} |
- ngs-sdk | 14 | {bio-dev} |
+ insighttoolkit4 | 16 | {imaging-dev} |
+ invesalius | 15 | {imaging} |
+ pixelmed | 14 | {imaging} |
plastimatch | 14 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- openslide | 13 | {imaging} |
- stacks | 12 | {bio} |
- adun.app | 11 | {bio} |
+ king | 13 | {imaging,typesetting} |
+ ngs-sdk | 13 | {bio-dev} |
+ stacks | 13 | {bio} |
+ adun.app | 12 | {bio} |
+ openslide | 12 | {imaging} |
biosig4c++ | 11 | {physics,imaging} |
obitools | 11 | {bio} |
librg-utils-perl | 10 | {bio} |
biojava-live | 9 | {bio-dev} |
psychopy | 9 | {psychology} |
+ radiant | 9 | {bio} |
+ ea-utils | 8 | {bio} |
+ ecopcr | 8 | {bio} |
+ fastlink | 8 | {cloud,bio} |
jebl2 | 8 | {bio-dev} |
mipe | 8 | {bio,cloud} |
- radiant | 8 | {bio} |
+ ncbi-seg | 8 | {bio} |
+ norsp | 8 | {bio} |
+ piler | 8 | {bio} |
+ sibsim4 | 8 | {cloud,bio} |
alter-sequence-alignment | 7 | {bio} |
+ ampliconnoise | 7 | {bio,cloud} |
arden | 7 | {cloud,bio} |
biomaj3-cli | 7 | {cloud} |
bio-tradis | 7 | {bio-dev,bio} |
bppsuite | 7 | {bio} |
- ea-utils | 7 | {bio} |
embassy-domainatrix | 7 | {bio,cloud} |
- fastlink | 7 | {cloud,bio} |
+ embassy-domsearch | 7 | {cloud,bio} |
indelible | 7 | {bio} |
- libminc | 7 | {imaging-dev} |
maqview | 7 | {bio} |
- ncbi-seg | 7 | {bio} |
- norsp | 7 | {bio} |
- piler | 7 | {bio} |
- sibsim4 | 7 | {cloud,bio} |
+ melting | 7 | {bio,cloud} |
+ ngs-sdk | 7 | {bio-dev} |
+ orthanc-webviewer | 7 | {imaging} |
+ pymia | 7 | {imaging-dev} |
+ sickle | 7 | {bio} |
+ sigma-align | 7 | {bio-phylogeny,bio,cloud} |
+ staden | 7 | {bio} |
abacas | 6 | {bio,covid-19} |
- ampliconnoise | 6 | {bio,cloud} |
anfo | 6 | {cloud,bio} |
+ beads | 6 | {bio} |
bitseq | 6 | {bio} |
brig | 6 | {bio} |
cluster3 | 6 | {bio} |
daligner | 6 | {bio,bio-ngs} |
dazzdb | 6 | {bio} |
- ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
+ elastix | 6 | {imaging} |
embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {cloud,bio} |
gatb-core | 6 | {bio} |
- melting | 6 | {bio,cloud} |
+ king-probe | 6 | {bio} |
+ mapsembler2 | 6 | {bio,cloud} |
mrs | 6 | {bio} |
- ngs-sdk | 6 | {bio-dev} |
- orthanc-webviewer | 6 | {imaging} |
+ neobio | 6 | {cloud,bio} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
+ orthanc-mysql | 6 | {imaging} |
+ paraclu | 6 | {cloud,bio} |
phast | 6 | {bio} |
- pymia | 6 | {imaging-dev} |
+ phyutility | 6 | {cloud,bio} |
+ predictprotein | 6 | {bio} |
+ prime-phylo | 6 | {cloud,bio} |
+ probabel | 6 | {cloud,bio} |
+ pscan-tfbs | 6 | {bio} |
+ rtax | 6 | {bio,cloud} |
+ saint | 6 | {bio} |
seer | 6 | {bio} |
seqtools | 6 | {bio} |
- sickle | 6 | {bio} |
- sigma-align | 6 | {bio-phylogeny,bio,cloud} |
- staden | 6 | {bio} |
+ snap-aligner | 6 | {bio} |
+ soapsnp | 6 | {bio} |
+ squizz | 6 | {cloud,bio} |
transtermhp | 6 | {bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ zalign | 6 | {bio,cloud} |
assemblytics | 5 | {bio} |
baitfisher | 5 | {bio} |
bandage | 5 | {bio} |
- beads | 5 | {bio} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
+ centrifuge | 5 | {covid-19,bio} |
clonalframeml | 5 | {covid-19,bio} |
+ clonalorigin | 5 | {bio} |
dascrubber | 5 | {bio} |
+ delly | 5 | {covid-19,bio} |
+ dicompyler | 5 | {oncology} |
dindel | 5 | {bio} |
- elastix | 5 | {imaging} |
estscan | 5 | {bio} |
- freebayes | 5 | {covid-19,bio} |
+ gasic | 5 | {bio,cloud} |
harvest-tools | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
- king-probe | 5 | {bio} |
lagan | 5 | {bio} |
- libdivsufsort | 5 | {bio-dev} |
+ libminc | 5 | {imaging-dev} |
libncl | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
+ microbegps | 5 | {bio} |
+ mlv-smile | 5 | {cloud,bio} |
murasaki | 5 | {bio} |
- neobio | 5 | {cloud,bio} |
nutsqlite | 5 | {tools} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
- orthanc-mysql | 5 | {imaging} |
- paraclu | 5 | {cloud,bio} |
- phyutility | 5 | {cloud,bio} |
- predictprotein | 5 | {bio} |
- prime-phylo | 5 | {cloud,bio} |
- probabel | 5 | {cloud,bio} |
- pscan-tfbs | 5 | {bio} |
+ orthanc-postgresql | 5 | {imaging} |
+ perm | 5 | {bio,cloud} |
+ phybin | 5 | {bio} |
+ placnet | 5 | {bio} |
+ proalign | 5 | {bio-phylogeny,bio} |
+ pscan-chip | 5 | {bio} |
+ quorum | 5 | {bio} |
+ rdp-alignment | 5 | {bio} |
+ rdp-readseq | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
- rtax | 5 | {bio,cloud} |
- saint | 5 | {bio} |
- seqtools | 5 | {bio} |
- snap-aligner | 5 | {bio} |
- soapsnp | 5 | {bio} |
- squizz | 5 | {cloud,bio} |
- treeview | 5 | {bio,bio-phylogeny} |
- zalign | 5 | {bio,cloud} |
+ roguenarok | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
+ scythe | 5 | {bio} |
+ sga | 5 | {bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
+ tracetuner | 5 | {bio} |
+ vsearch | 5 | {bio,covid-19} |
+ yaha | 5 | {bio} |
bart-view | 4 | {imaging} |
canu | 4 | {bio} |
- centrifuge | 4 | {covid-19,bio} |
- clonalorigin | 4 | {bio} |
- delly | 4 | {covid-19,bio} |
- dicompyler | 4 | {oncology} |
+ dwgsim | 4 | {bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- gasic | 4 | {bio,cloud} |
ghmm | 4 | {bio} |
jaligner | 4 | {bio} |
jmodeltest | 4 | {bio-phylogeny,bio} |
+ lamarc | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
- microbegps | 4 | {bio} |
- mlv-smile | 4 | {cloud,bio} |
- orthanc-postgresql | 4 | {imaging} |
- perm | 4 | {bio,cloud} |
- phybin | 4 | {bio} |
- placnet | 4 | {bio} |
- proalign | 4 | {bio-phylogeny,bio} |
- pscan-chip | 4 | {bio} |
- quorum | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- rdp-readseq | 4 | {bio} |
- roguenarok | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- scythe | 4 | {bio} |
- segemehl | 4 | {bio} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ maffilter | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
+ mhap | 4 | {bio-ngs,bio} |
+ mptp | 4 | {bio} |
+ patman | 4 | {bio} |
+ phipack | 4 | {bio} |
+ poretools | 4 | {bio} |
+ prottest | 4 | {bio-phylogeny,bio} |
+ qcumber | 4 | {bio} |
+ qrisk2 | 4 | {practice} |
+ rambo-k | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
+ scrm | 4 | {bio} |
+ seqmagick | 4 | {covid-19,bio} |
+ seqsero | 4 | {bio} |
seqtools | 4 | {bio} |
- sga | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ spaced | 4 | {bio} |
sprai | 4 | {bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
- tracetuner | 4 | {bio} |
- vsearch | 4 | {bio,covid-19} |
- yaha | 4 | {bio} |
+ suitename | 4 | {bio} |
+ surankco | 4 | {bio} |
+ tnseq-transit | 4 | {covid-19,bio} |
+ velvetoptimiser | 4 | {bio} |
beast2-mcmc | 3 | {bio} |
blasr | 3 | {bio,bio-ngs} |
- dwgsim | 3 | {bio} |
elph | 3 | {bio} |
+ getdata | 3 | {bio} |
hinge | 3 | {bio} |
- lamarc | 3 | {bio} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- maffilter | 3 | {bio} |
- mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
- mptp | 3 | {bio} |
- patman | 3 | {bio} |
+ logol | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
+ nanook | 3 | {bio} |
+ openslide | 3 | {imaging-dev} |
+ pal2nal | 3 | {bio} |
pbdagcon | 3 | {bio} |
- phipack | 3 | {bio} |
- poretools | 3 | {bio} |
- prottest | 3 | {bio-phylogeny,bio} |
- qcumber | 3 | {bio} |
- qrisk2 | 3 | {practice} |
- rambo-k | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
+ pilon | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ rampler | 3 | {bio} |
relion | 3 | {bio} |
- scrm | 3 | {bio} |
- seqmagick | 3 | {covid-19,bio} |
- seqsero | 3 | {bio} |
- soapaligner | 3 | {bio} |
- spaced | 3 | {bio} |
- suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- tnseq-transit | 3 | {covid-19,bio} |
- velvetoptimiser | 3 | {bio} |
- atropos | 2 | {bio} |
+ samblaster | 3 | {covid-19,bio} |
+ segemehl | 3 | {bio} |
+ sweed | 3 | {bio} |
+ trace2dbest | 3 | {bio} |
+ tvc | 3 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
blimps | 2 | {bio} |
busco | 2 | {covid-19,bio} |
- getdata | 2 | {bio} |
+ emboss-explorer | 2 | {bio} |
kma | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- libgff | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
- libvistaio | 2 | {imaging-dev} |
- logol | 2 | {bio} |
mencal | 2 | {tools} |
- metaphlan2 | 2 | {bio} |
- nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
- openslide | 2 | {imaging-dev} |
oscar | 2 | {practice,data,tools} |
- pal2nal | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
- pilon | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
- rampler | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
- samtools-legacy | 2 | {bio-dev} |
- seqan | 2 | {bio-dev} |
+ relion | 2 | {bio} |
sift | 2 | {bio} |
stringtie | 2 | {bio,covid-19} |
- sweed | 2 | {bio} |
- trace2dbest | 2 | {bio} |
- tvc | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- cufflinks | 1 | {cloud,bio} |
+ atropos | 1 | {bio} |
+ ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
- emboss-explorer | 1 | {bio} |
- emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libmaus2 | 1 | {bio-dev,covid-19} |
+ libgff | 1 | {bio-dev} |
libmialm | 1 | {imaging-dev} |
+ libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
+ murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
+ samtools-legacy | 1 | {bio-dev} |
+ seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
@@ -239,8 +237,9 @@ Last-Update: Tue, 02 Jun 2020 01:42:04 +0000
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- ctn | 0 | {imaging-dev} |
+ cufflinks | 0 | {cloud,bio} |
drop-seq | 0 | {bio,covid-19} |
+ emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
ivar | 0 | {covid-19} |
@@ -260,6 +259,7 @@ Last-Update: Tue, 02 Jun 2020 01:42:04 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -274,7 +274,6 @@ Last-Update: Tue, 02 Jun 2020 01:42:04 +0000
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
multiqc | 0 | {bio,covid-19} |
- murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -297,5 +296,5 @@ Last-Update: Tue, 02 Jun 2020 01:42:04 +0000
bustools | -1 | {covid-19,bio} |
cat-bat | -1 | {covid-19,bio} |
flash | -1 | {bio,covid-19} |
-(324 rows)
+(323 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/679096e273fa23563f2f4a27a70d5bce1009ff0d
--
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