[med-svn] [Git][med-team/norsp][master] 8 commits: routine-update: Standards-Version: 4.5.0
Andreas Tille
gitlab at salsa.debian.org
Thu Jun 4 07:40:23 BST 2020
Andreas Tille pushed to branch master at Debian Med / norsp
Commits:
e5fa230f by Andreas Tille at 2020-06-04T08:25:35+02:00
routine-update: Standards-Version: 4.5.0
- - - - -
25a42efd by Andreas Tille at 2020-06-04T08:25:35+02:00
routine-update: debhelper-compat 13
- - - - -
3259bf61 by Andreas Tille at 2020-06-04T08:25:49+02:00
routine-update: Remove trailing whitespace in debian/changelog
- - - - -
0e7e6029 by Andreas Tille at 2020-06-04T08:25:49+02:00
routine-update: Add salsa-ci file
- - - - -
59309df4 by Andreas Tille at 2020-06-04T08:25:50+02:00
routine-update: Rules-Requires-Root: no
- - - - -
6d79f40e by Andreas Tille at 2020-06-04T08:25:51+02:00
Trim trailing whitespace.
Fixes: lintian: file-contains-trailing-whitespace
See-also: https://lintian.debian.org/tags/file-contains-trailing-whitespace.html
- - - - -
5fb8df13 by Andreas Tille at 2020-06-04T08:33:39+02:00
Make sure norsp does not enforce pp-popularity-contest
- - - - -
0030963b by Andreas Tille at 2020-06-04T08:37:20+02:00
Upload to unstable
- - - - -
7 changed files:
- debian/changelog
- − debian/compat
- debian/control
- + debian/patches/no_pp_popcon_cnt.patch
- + debian/patches/series
- debian/rules
- + debian/salsa-ci.yml
Changes:
=====================================
debian/changelog
=====================================
@@ -1,4 +1,6 @@
-norsp (1.0.6-5) UNRELEASED; urgency=medium
+norsp (1.0.6-5) unstable; urgency=medium
+
+ * Team upload.
[ Steffen Moeller ]
* d/u/metadata: yamllint
@@ -9,6 +11,15 @@ norsp (1.0.6-5) UNRELEASED; urgency=medium
* Add autopkgtests
* Install docs
+ [ Andreas Tille ]
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Trim trailing whitespace.
+ * Make sure norsp does not enforce pp-popularity-contest
+
-- Pranav Ballaney <ballaneypranav at gmail.com> Thu, 04 Jun 2020 07:04:12 +0530
norsp (1.0.6-4) unstable; urgency=medium
@@ -47,19 +58,19 @@ norsp (1.0.6-1) unstable; urgency=low
norsp (1.0.5-1) unstable; urgency=low
- * New upstream release (Closes: #684856)
+ * New upstream release (Closes: #684856)
-- Laszlo Kajan <lkajan at rostlab.org> Tue, 14 Aug 2012 18:49:50 +0200
norsp (1.0.4-1) unstable; urgency=low
- * Initial release (Closes: #680367)
+ * Initial release (Closes: #680367)
-- Eva Reisinger <e.reisinger at gmx.net> Fri, 13 Jul 2012 11:53:07 +0000
norsp (1.0.3) unstable; urgency=low
- * recommends now on ncoils (>= 2002-3)
+ * recommends now on ncoils (>= 2002-3)
-- Laszlo Kajan <lkajan at rostlab.org> Thu, 27 Oct 2011 20:22:02 +0200
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -5,21 +5,22 @@ Uploaders: Laszlo Kajan <lkajan at rostlab.org>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.2.1
+Build-Depends: debhelper-compat (= 13)
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/norsp
Vcs-Git: https://salsa.debian.org/med-team/norsp.git
Homepage: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure
+Rules-Requires-Root: no
Package: norsp
Architecture: all
Depends: ${misc:Depends},
- ${perl:Depends},
- pp-popularity-contest
+ ${perl:Depends}
Recommends: blast2,
librg-utils-perl,
profphd,
ncoils
+Suggests: pp-popularity-contest
Description: predictor of non-regular secondary structure
NORSp is a publicly available predictor for disordered regions in proteins.
Specifically, it predicts long regions with no regular secondary structure.
=====================================
debian/patches/no_pp_popcon_cnt.patch
=====================================
@@ -0,0 +1,26 @@
+Description: Do not force users to install pp-popularity-contest
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 04 Jun 2020 07:04:12 +0530
+
+--- a/norsp
++++ b/norsp
+@@ -7,7 +7,7 @@
+ use Getopt::Long;
+
+ # popularity contest
+-if( system('pp_popcon_cnt', '-p', 'norsp') == -1 ){ warn("The Rost Lab recommends you install the pp-popularity-contest package that provides pp_popcon_cnt:\n\nsudo apt-get install pp-popularity-contest\n"); }
++#if( system('pp_popcon_cnt', '-p', 'norsp') == -1 ){ warn("The Rost Lab recommends you install the pp-popularity-contest package that provides pp_popcon_cnt:\n\nsudo apt-get install pp-popularity-contest\n"); }
+
+ &init();
+
+--- a/norsp.spec
++++ b/norsp.spec
+@@ -7,7 +7,7 @@ Group: Applications/Science
+ URL: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure
+ Source0: %{name}-%{version}.tar.gz
+ BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root
+-Requires: pp-popularity-contest, profphd, profphd-utils, coiledcoils
++Requires: profphd, profphd-utils, coiledcoils
+
+ %description
+ Many structurally flexible regions play important roles in biological processes. It has been shown that extended loopy regions are very abundant in nature, and that
=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+no_pp_popcon_cnt.patch
=====================================
debian/rules
=====================================
@@ -9,4 +9,3 @@ override_dh_compress:
%:
dh $@
-
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
View it on GitLab: https://salsa.debian.org/med-team/norsp/-/compare/fd64e3a3e87efb082964a02d63c6bfa6f1b02a10...0030963b047baf2e08442721b07246ff7d366cc5
--
View it on GitLab: https://salsa.debian.org/med-team/norsp/-/compare/fd64e3a3e87efb082964a02d63c6bfa6f1b02a10...0030963b047baf2e08442721b07246ff7d366cc5
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