Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c789a7b6 by Andreas Tille at 2020-06-05T13:46:13+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,12 +1,12 @@
-Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
+Last-Update: Fri, 05 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 191 | {covid-19,imaging} |
- orthanc | 95 | {imaging,covid-19,practice} |
+ dcmtk | 188 | {imaging,covid-19} |
+ orthanc | 93 | {imaging,covid-19,practice} |
gdcm | 58 | {imaging-dev} |
- orthanc-wsi | 44 | {imaging,laboratory,practice,covid-19,his,oncology} |
- htsjdk | 33 | {bio-dev} |
+ orthanc-wsi | 44 | {his,imaging,covid-19,laboratory,oncology,practice} |
+ htsjdk | 32 | {bio-dev} |
dicom3tools | 30 | {imaging} |
dcm2niix | 29 | {imaging} |
dicomscope | 27 | {imaging} |
@@ -18,35 +18,34 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
invesalius | 15 | {imaging} |
plastimatch | 14 | {imaging} |
vtk-dicom | 14 | {imaging} |
- gdcm | 13 | {imaging-dev} |
king | 13 | {imaging,typesetting} |
pixelmed | 13 | {imaging} |
stacks | 13 | {bio} |
adun.app | 12 | {bio} |
+ gdcm | 12 | {imaging-dev} |
obitools | 12 | {bio} |
openslide | 12 | {imaging} |
- biosig4c++ | 11 | {physics,imaging} |
+ biosig4c++ | 11 | {imaging,physics} |
biojava-live | 9 | {bio-dev} |
librg-utils-perl | 9 | {bio} |
+ ncbi-seg | 9 | {bio} |
radiant | 9 | {bio} |
biomaj3-cli | 8 | {cloud} |
ea-utils | 8 | {bio} |
ecopcr | 8 | {bio} |
fastlink | 8 | {cloud,bio} |
jebl2 | 8 | {bio-dev} |
- mipe | 8 | {bio,cloud} |
- ncbi-seg | 8 | {bio} |
+ mipe | 8 | {cloud,bio} |
ngs-sdk | 8 | {bio-dev} |
- norsp | 8 | {bio} |
psychopy | 8 | {psychology} |
sibsim4 | 8 | {cloud,bio} |
alter-sequence-alignment | 7 | {bio} |
- ampliconnoise | 7 | {bio,cloud} |
- arden | 7 | {cloud,bio} |
- bio-tradis | 7 | {bio-dev,bio} |
+ ampliconnoise | 7 | {cloud,bio} |
+ arden | 7 | {bio,cloud} |
+ bio-tradis | 7 | {bio,bio-dev} |
bppsuite | 7 | {bio} |
- embassy-domainatrix | 7 | {bio,cloud} |
- embassy-domsearch | 7 | {cloud,bio} |
+ embassy-domainatrix | 7 | {cloud,bio} |
+ embassy-domsearch | 7 | {bio,cloud} |
indelible | 7 | {bio} |
maqview | 7 | {bio} |
melting | 7 | {bio,cloud} |
@@ -54,10 +53,10 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
piler | 7 | {bio} |
pymia | 7 | {imaging-dev} |
sickle | 7 | {bio} |
- sigma-align | 7 | {bio-phylogeny,bio,cloud} |
+ sigma-align | 7 | {cloud,bio,bio-phylogeny} |
staden | 7 | {bio} |
abacas | 6 | {bio,covid-19} |
- anfo | 6 | {cloud,bio} |
+ anfo | 6 | {bio,cloud} |
bandage | 6 | {bio} |
beads | 6 | {bio} |
biomaj3-daemon | 6 | {bio} |
@@ -65,18 +64,18 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
brig | 6 | {bio} |
daligner | 6 | {bio,bio-ngs} |
dazzdb | 6 | {bio} |
- delly | 6 | {covid-19,bio} |
+ delly | 6 | {bio,covid-19} |
edtsurf | 6 | {bio} |
elastix | 6 | {imaging} |
- embassy-domalign | 6 | {cloud,bio} |
+ embassy-domalign | 6 | {bio,cloud} |
estscan | 6 | {bio} |
gatb-core | 6 | {bio} |
king-probe | 6 | {bio} |
lagan | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- mapsembler2 | 6 | {bio,cloud} |
+ mapsembler2 | 6 | {cloud,bio} |
mrs | 6 | {bio} |
- neobio | 6 | {cloud,bio} |
+ neobio | 6 | {bio,cloud} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
orthanc-mysql | 6 | {imaging} |
paraclu | 6 | {cloud,bio} |
@@ -84,30 +83,30 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
phyutility | 6 | {cloud,bio} |
predictprotein | 6 | {bio} |
prime-phylo | 6 | {cloud,bio} |
- probabel | 6 | {cloud,bio} |
+ probabel | 6 | {bio,cloud} |
pscan-tfbs | 6 | {bio} |
rtax | 6 | {bio,cloud} |
saint | 6 | {bio} |
seqtools | 6 | {bio} |
snap-aligner | 6 | {bio} |
soapsnp | 6 | {bio} |
- squizz | 6 | {cloud,bio} |
+ squizz | 6 | {bio,cloud} |
tracetuner | 6 | {bio} |
transtermhp | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
- vsearch | 6 | {bio,covid-19} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ vsearch | 6 | {covid-19,bio} |
zalign | 6 | {bio,cloud} |
assemblytics | 5 | {bio} |
baitfisher | 5 | {bio} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
bio-rainbow | 5 | {bio} |
- centrifuge | 5 | {covid-19,bio} |
+ centrifuge | 5 | {bio,covid-19} |
clonalframeml | 5 | {covid-19,bio} |
clonalorigin | 5 | {bio} |
cluster3 | 5 | {bio} |
dascrubber | 5 | {bio} |
dindel | 5 | {bio} |
- gasic | 5 | {bio,cloud} |
+ gasic | 5 | {cloud,bio} |
ghmm | 5 | {bio} |
harvest-tools | 5 | {bio} |
ipig | 5 | {bio} |
@@ -118,10 +117,9 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
murasaki | 5 | {bio} |
nutsqlite | 5 | {tools} |
orthanc-postgresql | 5 | {imaging} |
- perm | 5 | {bio,cloud} |
+ perm | 5 | {cloud,bio} |
phybin | 5 | {bio} |
placnet | 5 | {bio} |
- proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
quorum | 5 | {bio} |
rdp-alignment | 5 | {bio} |
@@ -136,7 +134,7 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
yaha | 5 | {bio} |
bart-view | 4 | {imaging} |
beast2-mcmc | 4 | {bio} |
- blasr | 4 | {bio,bio-ngs} |
+ blasr | 4 | {bio-ngs,bio} |
canu | 4 | {bio} |
dicompyler | 4 | {oncology} |
dwgsim | 4 | {bio} |
@@ -145,14 +143,14 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
fsm-lite | 4 | {bio} |
hinge | 4 | {bio} |
jaligner | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
lamarc | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio-ngs,bio} |
+ mhap | 4 | {bio,bio-ngs} |
mptp | 4 | {bio} |
pal2nal | 4 | {bio} |
patman | 4 | {bio} |
@@ -160,6 +158,7 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
phipack | 4 | {bio} |
pilon | 4 | {bio} |
plasmidseeker | 4 | {bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
prottest | 4 | {bio-phylogeny,bio} |
qcumber | 4 | {bio} |
qrisk2 | 4 | {practice} |
@@ -167,7 +166,7 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
rampler | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
- samblaster | 4 | {covid-19,bio} |
+ samblaster | 4 | {bio,covid-19} |
scrm | 4 | {bio} |
segemehl | 4 | {bio} |
seqmagick | 4 | {covid-19,bio} |
@@ -179,7 +178,7 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
suitename | 4 | {bio} |
surankco | 4 | {bio} |
sweed | 4 | {bio} |
- tnseq-transit | 4 | {covid-19,bio} |
+ tnseq-transit | 4 | {bio,covid-19} |
trace2dbest | 4 | {bio} |
tvc | 4 | {bio} |
velvetoptimiser | 4 | {bio} |
@@ -200,7 +199,7 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
sift | 2 | {bio} |
acedb | 1 | {cloud,bio} |
ctn | 1 | {imaging-dev} |
- embassy-phylip | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
@@ -210,25 +209,24 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
libxdf | 1 | {imaging-dev} |
murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {practice,data,tools} |
+ oscar | 1 | {data,tools,practice} |
python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
srf | 1 | {bio-dev} |
- stringtie | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
atropos | 0 | {bio} |
- augur | 0 | {bio,covid-19} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
+ cufflinks | 0 | {bio,cloud} |
drop-seq | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -252,7 +250,7 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -283,15 +281,16 @@ Last-Update: Fri, 05 Jun 2020 01:42:03 +0000
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
spaln | 0 | {bio,covid-19} |
- thesias | 0 | {bio,covid-19} |
+ stringtie | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
- bustools | -1 | {covid-19,bio} |
- cat-bat | -1 | {covid-19,bio} |
- flash | -1 | {bio,covid-19} |
-(320 rows)
+ bustools | -1 | {bio,covid-19} |
+ cat-bat | -1 | {bio,covid-19} |
+ flash | -1 | {covid-19,bio} |
+(319 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c789a7b6bf46e0a05684c8274eda3ee67209c4fc
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c789a7b6bf46e0a05684c8274eda3ee67209c4fc
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