[med-svn] [Git][med-team/rna-star][master] 9 commits: New upstream version 2.7.4a+dfsg

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / rna-star


Commits:
100d45a1 by Steffen Moeller at 2020-06-06T20:31:00+02:00
New upstream version 2.7.4a+dfsg
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b4664ebc by Steffen Moeller at 2020-06-06T20:31:00+02:00
routine-update: New upstream version

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2d2bc5b3 by Steffen Moeller at 2020-06-06T20:31:01+02:00
Update upstream source from tag 'upstream/2.7.4a+dfsg'

Update to upstream version '2.7.4a+dfsg'
with Debian dir f586b5aed82ec8abfdf9a813d940998544d393a4
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811b71c5 by Steffen Moeller at 2020-06-06T20:31:01+02:00
routine-update: Standards-Version: 4.5.0

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a82335f5 by Steffen Moeller at 2020-06-06T20:31:01+02:00
routine-update: debhelper-compat 13

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3f88216a by Steffen Moeller at 2020-06-06T20:31:05+02:00
routine-update: Add salsa-ci file

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7df3eb20 by Steffen Moeller at 2020-06-06T20:31:05+02:00
routine-update: Rules-Requires-Root: no

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32903623 by Steffen Moeller at 2020-06-06T20:31:09+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html


Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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af6e03a4 by Steffen Moeller at 2020-06-06T20:32:44+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- CHANGES.md
- README.md
- debian/changelog
- debian/control
- + debian/salsa-ci.yml
- debian/upstream/metadata
- doc/STARmanual.pdf
- docs/STARsolo.md
- extras/doc-latex/STARmanual.tex
- extras/doc-latex/parametersDefault.tex
- extras/docker/Dockerfile
- source/BAMbinSortByCoordinate.cpp
- source/Genome_genomeGenerate.cpp
- source/Makefile
- source/Parameters.cpp
- source/Parameters.h
- source/ParametersSolo.cpp
- source/ParametersSolo.h
- source/Parameters_openReadsFiles.cpp
- source/ReadAlignChunk_processChunks.cpp
- source/ReadAlign_alignBAM.cpp
- source/ReadAlign_mapOneRead.cpp
- source/ReadAlign_maxMappableLength2strands.cpp
- source/ReadAlign_outputAlignments.cpp
- source/ReadAlign_quantTranscriptome.cpp
- source/STAR.cpp
- source/SoloFeature_cellFiltering.cpp
- source/SoloFeature_countCBgeneUMI.cpp
- source/SoloFeature_countVelocyto.cpp
- source/SoloFeature_outputResults.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/rna-star/-/compare/52ceea50a98aaae51a5c14d4d850017fbc70bf8b...af6e03a425039bbe0ebc711710ba66383cbb2b06

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View it on GitLab: https://salsa.debian.org/med-team/rna-star/-/compare/52ceea50a98aaae51a5c14d4d850017fbc70bf8b...af6e03a425039bbe0ebc711710ba66383cbb2b06
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