[med-svn] [Git][med-team/nanosv][master] 2 commits: Do not require configparser which is part of Python3

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / nanosv


Commits:
c56cb0fc by Andreas Tille at 2020-06-08T14:24:19+02:00
Do not require configparser which is part of Python3

- - - - -
efa86fae by Andreas Tille at 2020-06-08T14:24:31+02:00
Fix depends

- - - - -


4 changed files:

- debian/control
- debian/patches/fix_setup.patch
- + debian/patches/python3_has_buildin_configparser.patch
- debian/patches/series


Changes:

=====================================
debian/control
=====================================
@@ -1,19 +1,24 @@
 Source: nanosv
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper-compat (= 12), dh-python, python3-setuptools, python3-all
+Section: science
+Priority: optional
+Build-Depends: debhelper-compat (= 12),
+               dh-python,
+               python3-setuptools,
+               python3-all
 Standards-Version: 4.5.0
-Homepage: https://github.com/mroosmalen/nanosv
 Vcs-Browser: https://salsa.debian.org/med-team/nanosv
 Vcs-Git: https://salsa.debian.org/med-team/nanosv.git
+Homepage: https://github.com/mroosmalen/nanosv
 Rules-Requires-Root: no
-#Testsuite: autopkgtest-pkg-python
 
 Package: nanosv
 Architecture: all
-Depends: ${python3:Depends}, ${misc:Depends}
+Depends: ${python3:Depends},
+         ${misc:Depends},
+         python3-pysam,
+         python3-vcf
 Description: structural variant caller for nanopore data
  NanoSV is a software package that can be used to identify structural
  genomic variations in long-read sequencing data, such as data produced


=====================================
debian/patches/fix_setup.patch
=====================================
@@ -1,3 +1,7 @@
+Author: Steffen Möller
+Last-Update: 2020-06-07 17:34:55 +0200
+Description: Fix typo in setup.py
+
 Index: nanosv-1.2.4/setup.py
 ===================================================================
 --- nanosv-1.2.4.orig/setup.py


=====================================
debian/patches/python3_has_buildin_configparser.patch
=====================================
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 08 Jun 2020 14:23:48 +0200
+Description: Do not require configparser which is part of Python3
+
+--- a/setup.py
++++ b/setup.py
+@@ -27,7 +27,7 @@ setup( name='NanoSV',
+        author_email='m.vanroosmalen-2 at umcutrecht.nl',
+        license='MIT',
+        python_requires='>=3',
+-       install_requires=['pysam>=0.11','pyvcf','configparser'],
++       install_requires=['pysam>=0.11','pyvcf'],
+        packages=['nanosv','nanosv.utils','nanosv.classes'],
+        package_data={'nanosv': ['config.ini','bedfiles/*.bed']},
+        including_package_data=True,


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 fix_setup.patch
+python3_has_buildin_configparser.patch



View it on GitLab: https://salsa.debian.org/med-team/nanosv/-/compare/09f61d1ac5423a2117119df7d38cbf89c059a703...efa86faebd73195e36429578841a88807776ae1b

-- 
View it on GitLab: https://salsa.debian.org/med-team/nanosv/-/compare/09f61d1ac5423a2117119df7d38cbf89c059a703...efa86faebd73195e36429578841a88807776ae1b
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