Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
acef2183 by Andreas Tille at 2020-06-08T13:46:04+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,38 +1,39 @@
-Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
+Last-Update: Mon, 08 Jun 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 187 | {covid-19,imaging} |
- orthanc | 91 | {imaging,covid-19,practice} |
- gdcm | 54 | {imaging-dev} |
- orthanc-wsi | 42 | {covid-19,his,laboratory,practice,imaging,oncology} |
+ dcmtk | 184 | {covid-19,imaging} |
+ orthanc | 90 | {covid-19,practice,imaging} |
+ gdcm | 52 | {imaging-dev} |
+ orthanc-wsi | 42 | {his,oncology,practice,imaging,covid-19,laboratory} |
htsjdk | 30 | {bio-dev} |
dcm2niix | 29 | {imaging} |
- dicom3tools | 29 | {imaging} |
- dicomscope | 27 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
- gnumed-server | 19 | {practice,covid-19} |
- minc-tools | 18 | {imaging} |
- insighttoolkit4 | 17 | {imaging-dev} |
+ dicomscope | 29 | {imaging} |
+ dicom3tools | 28 | {imaging} |
+ gnumed-server | 19 | {covid-19,practice} |
+ gdcm | 18 | {imaging,covid-19} |
+ minc-tools | 17 | {imaging} |
+ invesalius | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- invesalius | 15 | {imaging} |
- plastimatch | 14 | {imaging} |
- king | 13 | {imaging,typesetting} |
- pixelmed | 13 | {imaging} |
- vtk-dicom | 13 | {imaging} |
- adun.app | 12 | {bio} |
- gdcm | 12 | {imaging-dev} |
- openslide | 12 | {imaging} |
- biosig4c++ | 11 | {physics,imaging} |
- stacks | 11 | {bio} |
+ insighttoolkit4 | 15 | {imaging-dev} |
+ adun.app | 13 | {bio} |
+ plastimatch | 13 | {imaging} |
+ king | 12 | {typesetting,imaging} |
+ vtk-dicom | 12 | {imaging} |
+ gdcm | 11 | {imaging-dev} |
+ openslide | 11 | {imaging} |
+ pixelmed | 11 | {imaging} |
+ biosig4c++ | 10 | {physics,imaging} |
obitools | 10 | {bio} |
biojava-live | 8 | {bio-dev} |
jebl2 | 8 | {bio-dev} |
psychopy | 8 | {psychology} |
radiant | 8 | {bio} |
+ stacks | 8 | {bio} |
biomaj3-cli | 7 | {cloud} |
+ cluster3 | 7 | {bio} |
ecopcr | 7 | {bio} |
- fastlink | 7 | {bio,cloud} |
+ fastlink | 7 | {cloud,bio} |
indelible | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
mipe | 7 | {bio,cloud} |
@@ -42,35 +43,34 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
alter-sequence-alignment | 6 | {bio} |
ampliconnoise | 6 | {bio,cloud} |
arden | 6 | {cloud,bio} |
- bio-tradis | 6 | {bio,bio-dev} |
+ bio-tradis | 6 | {bio-dev,bio} |
bppsuite | 6 | {bio} |
- cluster3 | 6 | {bio} |
ea-utils | 6 | {bio} |
elastix | 6 | {imaging} |
- embassy-domainatrix | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {cloud,bio} |
+ embassy-domainatrix | 6 | {bio,cloud} |
+ embassy-domsearch | 6 | {bio,cloud} |
libminc | 6 | {imaging-dev} |
maqview | 6 | {bio} |
- melting | 6 | {cloud,bio} |
+ melting | 6 | {bio,cloud} |
orthanc-webviewer | 6 | {imaging} |
- phyutility | 6 | {bio,cloud} |
+ phyutility | 6 | {cloud,bio} |
piler | 6 | {bio} |
sickle | 6 | {bio} |
sigma-align | 6 | {cloud,bio-phylogeny,bio} |
- staden | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ vsearch | 6 | {bio,covid-19} |
abacas | 5 | {covid-19,bio} |
- anfo | 5 | {bio,cloud} |
+ anfo | 5 | {cloud,bio} |
bandage | 5 | {bio} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
bitseq | 5 | {bio} |
brig | 5 | {bio} |
- daligner | 5 | {bio-ngs,bio} |
+ daligner | 5 | {bio,bio-ngs} |
dazzdb | 5 | {bio} |
delly | 5 | {bio,covid-19} |
edtsurf | 5 | {bio} |
- embassy-domalign | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {bio,cloud} |
estscan | 5 | {bio} |
gatb-core | 5 | {bio} |
king-probe | 5 | {bio} |
@@ -81,7 +81,7 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
nutsqlite | 5 | {tools} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
orthanc-mysql | 5 | {imaging} |
- paraclu | 5 | {cloud,bio} |
+ paraclu | 5 | {bio,cloud} |
phast | 5 | {bio} |
prime-phylo | 5 | {bio,cloud} |
probabel | 5 | {bio,cloud} |
@@ -92,18 +92,18 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
seqtools | 5 | {bio} |
snap-aligner | 5 | {bio} |
soapsnp | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
- squizz | 5 | {bio,cloud} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ squizz | 5 | {cloud,bio} |
+ staden | 5 | {bio} |
tracetuner | 5 | {bio} |
transtermhp | 5 | {bio} |
- vsearch | 5 | {covid-19,bio} |
- zalign | 5 | {bio,cloud} |
+ zalign | 5 | {cloud,bio} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
bio-rainbow | 4 | {bio} |
- centrifuge | 4 | {bio,covid-19} |
+ centrifuge | 4 | {covid-19,bio} |
clonalframeml | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
dascrubber | 4 | {bio} |
@@ -118,7 +118,7 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
microbegps | 4 | {bio} |
- mlv-smile | 4 | {cloud,bio} |
+ mlv-smile | 4 | {bio,cloud} |
murasaki | 4 | {bio} |
orthanc-postgresql | 4 | {imaging} |
perm | 4 | {cloud,bio} |
@@ -133,13 +133,15 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
repeatmasker-recon | 4 | {bio} |
roguenarok | 4 | {bio} |
runcircos-gui | 4 | {bio} |
+ salmon | 4 | {bio,covid-19} |
scythe | 4 | {bio} |
+ segemehl | 4 | {bio} |
seqsero | 4 | {bio} |
sga | 4 | {bio} |
- tnseq-transit | 4 | {bio,covid-19} |
+ tnseq-transit | 4 | {covid-19,bio} |
yaha | 4 | {bio} |
beast2-mcmc | 3 | {bio} |
- blasr | 3 | {bio-ngs,bio} |
+ blasr | 3 | {bio,bio-ngs} |
canu | 3 | {bio} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
@@ -154,7 +156,7 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
libsbml | 3 | {bio-dev} |
maffilter | 3 | {bio} |
mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio,bio-ngs} |
+ mhap | 3 | {bio-ngs,bio} |
mptp | 3 | {bio} |
openslide | 3 | {imaging-dev} |
pal2nal | 3 | {bio} |
@@ -170,10 +172,8 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
rampler | 3 | {bio} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
- salmon | 3 | {covid-19,bio} |
samblaster | 3 | {bio,covid-19} |
scrm | 3 | {bio} |
- segemehl | 3 | {bio} |
seqmagick | 3 | {covid-19,bio} |
seqtools | 3 | {bio} |
soapaligner | 3 | {bio} |
@@ -185,9 +185,10 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
trace2dbest | 3 | {bio} |
tvc | 3 | {bio} |
velvetoptimiser | 3 | {bio} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
biosig4c++ | 2 | {physics,imaging-dev} |
blimps | 2 | {bio} |
- busco | 2 | {covid-19,bio} |
+ busco | 2 | {bio,covid-19} |
libbio-mage-utils-perl | 2 | {bio-dev} |
logol | 2 | {bio} |
mencal | 2 | {tools} |
@@ -196,7 +197,7 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
papyrus | 2 | {imaging-dev} |
relion | 2 | {bio} |
sift | 2 | {bio} |
- acedb | 1 | {bio,cloud} |
+ acedb | 1 | {cloud,bio} |
ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
@@ -207,9 +208,8 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
murasaki | 1 | {bio} |
- ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {data,practice,tools} |
+ oscar | 1 | {practice,data,tools} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
@@ -226,7 +226,7 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {bio,cloud} |
- drop-seq | 0 | {covid-19,bio} |
+ drop-seq | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
@@ -249,7 +249,7 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -263,15 +263,16 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {bio,covid-19} |
+ multiqc | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
+ ngs-sdk | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- python-py2bit | 0 | {bio,bio-dev} |
+ python-py2bit | 0 | {bio-dev,bio} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
@@ -280,16 +281,16 @@ Last-Update: Mon, 08 Jun 2020 01:42:03 +0000
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {bio,covid-19} |
- stringtie | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {covid-19,bio} |
+ spaln | 0 | {covid-19,bio} |
+ stringtie | 0 | {bio,covid-19} |
thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
- bustools | -1 | {bio,covid-19} |
+ bustools | -1 | {covid-19,bio} |
cat-bat | -1 | {covid-19,bio} |
flash | -1 | {bio,covid-19} |
- pycoqc | -1 | {bio,covid-19} |
-(318 rows)
+ pycoqc | -1 | {covid-19,bio} |
+(319 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/acef218377c58c0463fbd154f6750e1eede74310
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