[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Tue Jun 9 14:45:19 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
cb95b019 by Andreas Tille at 2020-06-09T13:45:12+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,220 +1,217 @@
-Last-Update: Tue, 09 Jun 2020 01:42:04 +0000
+Last-Update: Tue, 09 Jun 2020 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    184 | {covid-19,imaging}                                  | 
- orthanc                       |     90 | {covid-19,practice,imaging}                         | 
+ dcmtk                         |    177 | {covid-19,imaging}                                  | 
+ orthanc                       |     89 | {imaging,practice,covid-19}                         | 
  gdcm                          |     52 | {imaging-dev}                                       | 
- orthanc-wsi                   |     42 | {his,oncology,practice,imaging,covid-19,laboratory} | 
- htsjdk                        |     30 | {bio-dev}                                           | 
- dcm2niix                      |     29 | {imaging}                                           | 
- dicomscope                    |     29 | {imaging}                                           | 
- dicom3tools                   |     28 | {imaging}                                           | 
- gnumed-server                 |     19 | {covid-19,practice}                                 | 
+ orthanc-wsi                   |     40 | {laboratory,practice,imaging,oncology,covid-19,his} | 
+ htsjdk                        |     32 | {bio-dev}                                           | 
+ dcm2niix                      |     28 | {imaging}                                           | 
+ dicomscope                    |     28 | {imaging}                                           | 
+ dicom3tools                   |     27 | {imaging}                                           | 
+ gnumed-server                 |     19 | {practice,covid-19}                                 | 
  gdcm                          |     18 | {imaging,covid-19}                                  | 
- minc-tools                    |     17 | {imaging}                                           | 
  invesalius                    |     16 | {imaging}                                           | 
+ minc-tools                    |     16 | {imaging}                                           | 
  ngs-sdk                       |     16 | {bio-dev}                                           | 
  insighttoolkit4               |     15 | {imaging-dev}                                       | 
- adun.app                      |     13 | {bio}                                               | 
  plastimatch                   |     13 | {imaging}                                           | 
- king                          |     12 | {typesetting,imaging}                               | 
+ adun.app                      |     12 | {bio}                                               | 
+ king                          |     12 | {imaging,typesetting}                               | 
  vtk-dicom                     |     12 | {imaging}                                           | 
  gdcm                          |     11 | {imaging-dev}                                       | 
  openslide                     |     11 | {imaging}                                           | 
  pixelmed                      |     11 | {imaging}                                           | 
- biosig4c++                    |     10 | {physics,imaging}                                   | 
- obitools                      |     10 | {bio}                                               | 
+ biosig4c++                    |     10 | {imaging,physics}                                   | 
+ jebl2                         |      9 | {bio-dev}                                           | 
  biojava-live                  |      8 | {bio-dev}                                           | 
- jebl2                         |      8 | {bio-dev}                                           | 
+ obitools                      |      8 | {bio}                                               | 
  psychopy                      |      8 | {psychology}                                        | 
- radiant                       |      8 | {bio}                                               | 
- stacks                        |      8 | {bio}                                               | 
- biomaj3-cli                   |      7 | {cloud}                                             | 
  cluster3                      |      7 | {bio}                                               | 
- ecopcr                        |      7 | {bio}                                               | 
- fastlink                      |      7 | {cloud,bio}                                         | 
- indelible                     |      7 | {bio}                                               | 
- librg-utils-perl              |      7 | {bio}                                               | 
- mipe                          |      7 | {bio,cloud}                                         | 
- ncbi-seg                      |      7 | {bio}                                               | 
- ngs-sdk                       |      7 | {bio-dev}                                           | 
- sibsim4                       |      7 | {bio,cloud}                                         | 
+ radiant                       |      7 | {bio}                                               | 
+ stacks                        |      7 | {bio}                                               | 
  alter-sequence-alignment      |      6 | {bio}                                               | 
- ampliconnoise                 |      6 | {bio,cloud}                                         | 
- arden                         |      6 | {cloud,bio}                                         | 
- bio-tradis                    |      6 | {bio-dev,bio}                                       | 
- bppsuite                      |      6 | {bio}                                               | 
- ea-utils                      |      6 | {bio}                                               | 
- elastix                       |      6 | {imaging}                                           | 
- embassy-domainatrix           |      6 | {bio,cloud}                                         | 
- embassy-domsearch             |      6 | {bio,cloud}                                         | 
+ biomaj3-cli                   |      6 | {cloud}                                             | 
+ ecopcr                        |      6 | {bio}                                               | 
+ fastlink                      |      6 | {cloud,bio}                                         | 
+ indelible                     |      6 | {bio}                                               | 
  libminc                       |      6 | {imaging-dev}                                       | 
- maqview                       |      6 | {bio}                                               | 
+ librg-utils-perl              |      6 | {bio}                                               | 
  melting                       |      6 | {bio,cloud}                                         | 
+ mipe                          |      6 | {cloud,bio}                                         | 
+ ncbi-seg                      |      6 | {bio}                                               | 
+ ngs-sdk                       |      6 | {bio-dev}                                           | 
  orthanc-webviewer             |      6 | {imaging}                                           | 
- phyutility                    |      6 | {cloud,bio}                                         | 
- piler                         |      6 | {bio}                                               | 
- sickle                        |      6 | {bio}                                               | 
- sigma-align                   |      6 | {cloud,bio-phylogeny,bio}                           | 
- treeview                      |      6 | {bio-phylogeny,bio}                                 | 
+ sibsim4                       |      6 | {cloud,bio}                                         | 
+ treeview                      |      6 | {bio,bio-phylogeny}                                 | 
  vsearch                       |      6 | {bio,covid-19}                                      | 
- abacas                        |      5 | {covid-19,bio}                                      | 
- anfo                          |      5 | {cloud,bio}                                         | 
- bandage                       |      5 | {bio}                                               | 
- beads                         |      5 | {bio}                                               | 
- biomaj3-daemon                |      5 | {bio}                                               | 
- bitseq                        |      5 | {bio}                                               | 
+ ampliconnoise                 |      5 | {bio,cloud}                                         | 
+ arden                         |      5 | {bio,cloud}                                         | 
+ beast-mcmc                    |      5 | {bio-phylogeny,bio}                                 | 
+ bio-tradis                    |      5 | {bio,bio-dev}                                       | 
+ bppsuite                      |      5 | {bio}                                               | 
  brig                          |      5 | {bio}                                               | 
- daligner                      |      5 | {bio,bio-ngs}                                       | 
- dazzdb                        |      5 | {bio}                                               | 
- delly                         |      5 | {bio,covid-19}                                      | 
- edtsurf                       |      5 | {bio}                                               | 
- embassy-domalign              |      5 | {bio,cloud}                                         | 
- estscan                       |      5 | {bio}                                               | 
- gatb-core                     |      5 | {bio}                                               | 
- king-probe                    |      5 | {bio}                                               | 
- lagan                         |      5 | {bio}                                               | 
- mapsembler2                   |      5 | {cloud,bio}                                         | 
- mrs                           |      5 | {bio}                                               | 
- neobio                        |      5 | {bio,cloud}                                         | 
+ ea-utils                      |      5 | {bio}                                               | 
+ elastix                       |      5 | {imaging}                                           | 
+ embassy-domainatrix           |      5 | {cloud,bio}                                         | 
+ embassy-domsearch             |      5 | {bio,cloud}                                         | 
+ maqview                       |      5 | {bio}                                               | 
  nutsqlite                     |      5 | {tools}                                             | 
  orthanc-dicomweb              |      5 | {covid-19,imaging}                                  | 
  orthanc-mysql                 |      5 | {imaging}                                           | 
- paraclu                       |      5 | {bio,cloud}                                         | 
- phast                         |      5 | {bio}                                               | 
- prime-phylo                   |      5 | {bio,cloud}                                         | 
- probabel                      |      5 | {bio,cloud}                                         | 
- pscan-tfbs                    |      5 | {bio}                                               | 
- pymia                         |      5 | {imaging-dev}                                       | 
- rtax                          |      5 | {bio,cloud}                                         | 
- saint                         |      5 | {bio}                                               | 
- seqtools                      |      5 | {bio}                                               | 
+ phyutility                    |      5 | {bio,cloud}                                         | 
+ piler                         |      5 | {bio}                                               | 
+ sickle                        |      5 | {bio}                                               | 
+ sigma-align                   |      5 | {cloud,bio-phylogeny,bio}                           | 
  snap-aligner                  |      5 | {bio}                                               | 
- soapsnp                       |      5 | {bio}                                               | 
- spread-phy                    |      5 | {bio-phylogeny,bio}                                 | 
- squizz                        |      5 | {cloud,bio}                                         | 
- staden                        |      5 | {bio}                                               | 
- tracetuner                    |      5 | {bio}                                               | 
- transtermhp                   |      5 | {bio}                                               | 
- zalign                        |      5 | {cloud,bio}                                         | 
- assemblytics                  |      4 | {bio}                                               | 
- baitfisher                    |      4 | {bio}                                               | 
+ spread-phy                    |      5 | {bio,bio-phylogeny}                                 | 
+ abacas                        |      4 | {covid-19,bio}                                      | 
+ anfo                          |      4 | {bio,cloud}                                         | 
+ bandage                       |      4 | {bio}                                               | 
  bart-view                     |      4 | {imaging}                                           | 
- beast-mcmc                    |      4 | {bio,bio-phylogeny}                                 | 
- bio-rainbow                   |      4 | {bio}                                               | 
- centrifuge                    |      4 | {covid-19,bio}                                      | 
- clonalframeml                 |      4 | {bio,covid-19}                                      | 
- clonalorigin                  |      4 | {bio}                                               | 
- dascrubber                    |      4 | {bio}                                               | 
+ beads                         |      4 | {bio}                                               | 
+ biomaj3-daemon                |      4 | {bio}                                               | 
+ bitseq                        |      4 | {bio}                                               | 
+ daligner                      |      4 | {bio-ngs,bio}                                       | 
+ dazzdb                        |      4 | {bio}                                               | 
+ delly                         |      4 | {covid-19,bio}                                      | 
  dicompyler                    |      4 | {oncology}                                          | 
- dindel                        |      4 | {bio}                                               | 
- gasic                         |      4 | {cloud,bio}                                         | 
+ edtsurf                       |      4 | {bio}                                               | 
+ embassy-domalign              |      4 | {bio,cloud}                                         | 
+ estscan                       |      4 | {bio}                                               | 
+ gatb-core                     |      4 | {bio}                                               | 
  getdata                       |      4 | {bio}                                               | 
- ghmm                          |      4 | {bio}                                               | 
- harvest-tools                 |      4 | {bio}                                               | 
- ipig                          |      4 | {bio}                                               | 
- jellyfish1                    |      4 | {bio}                                               | 
+ king-probe                    |      4 | {bio}                                               | 
+ lagan                         |      4 | {bio}                                               | 
  libdivsufsort                 |      4 | {bio-dev}                                           | 
- libncl                        |      4 | {bio}                                               | 
- microbegps                    |      4 | {bio}                                               | 
- mlv-smile                     |      4 | {bio,cloud}                                         | 
- murasaki                      |      4 | {bio}                                               | 
+ mapsembler2                   |      4 | {bio,cloud}                                         | 
+ neobio                        |      4 | {cloud,bio}                                         | 
  orthanc-postgresql            |      4 | {imaging}                                           | 
- perm                          |      4 | {cloud,bio}                                         | 
- phybin                        |      4 | {bio}                                               | 
- placnet                       |      4 | {bio}                                               | 
+ paraclu                       |      4 | {bio,cloud}                                         | 
+ phast                         |      4 | {bio}                                               | 
  predictprotein                |      4 | {bio}                                               | 
- pscan-chip                    |      4 | {bio}                                               | 
+ prime-phylo                   |      4 | {bio,cloud}                                         | 
+ probabel                      |      4 | {cloud,bio}                                         | 
+ pscan-tfbs                    |      4 | {bio}                                               | 
+ pymia                         |      4 | {imaging-dev}                                       | 
  qrisk2                        |      4 | {practice}                                          | 
- quorum                        |      4 | {bio}                                               | 
  rdp-alignment                 |      4 | {bio}                                               | 
  rdp-readseq                   |      4 | {bio}                                               | 
- repeatmasker-recon            |      4 | {bio}                                               | 
- roguenarok                    |      4 | {bio}                                               | 
- runcircos-gui                 |      4 | {bio}                                               | 
- salmon                        |      4 | {bio,covid-19}                                      | 
- scythe                        |      4 | {bio}                                               | 
- segemehl                      |      4 | {bio}                                               | 
- seqsero                       |      4 | {bio}                                               | 
- sga                           |      4 | {bio}                                               | 
- tnseq-transit                 |      4 | {covid-19,bio}                                      | 
- yaha                          |      4 | {bio}                                               | 
+ rtax                          |      4 | {cloud,bio}                                         | 
+ saint                         |      4 | {bio}                                               | 
+ seqtools                      |      4 | {bio}                                               | 
+ soapsnp                       |      4 | {bio}                                               | 
+ squizz                        |      4 | {bio,cloud}                                         | 
+ staden                        |      4 | {bio}                                               | 
+ tracetuner                    |      4 | {bio}                                               | 
+ transtermhp                   |      4 | {bio}                                               | 
+ zalign                        |      4 | {cloud,bio}                                         | 
+ assemblytics                  |      3 | {bio}                                               | 
+ baitfisher                    |      3 | {bio}                                               | 
  beast2-mcmc                   |      3 | {bio}                                               | 
- blasr                         |      3 | {bio,bio-ngs}                                       | 
+ bio-rainbow                   |      3 | {bio}                                               | 
  canu                          |      3 | {bio}                                               | 
- dwgsim                        |      3 | {bio}                                               | 
- elph                          |      3 | {bio}                                               | 
- fastml                        |      3 | {bio}                                               | 
- fsm-lite                      |      3 | {bio}                                               | 
- hinge                         |      3 | {bio}                                               | 
+ centrifuge                    |      3 | {covid-19,bio}                                      | 
+ clonalframeml                 |      3 | {covid-19,bio}                                      | 
+ clonalorigin                  |      3 | {bio}                                               | 
+ dascrubber                    |      3 | {bio}                                               | 
+ dindel                        |      3 | {bio}                                               | 
+ gasic                         |      3 | {bio,cloud}                                         | 
+ ghmm                          |      3 | {bio}                                               | 
+ harvest-tools                 |      3 | {bio}                                               | 
+ ipig                          |      3 | {bio}                                               | 
  jaligner                      |      3 | {bio}                                               | 
+ jellyfish1                    |      3 | {bio}                                               | 
  jmodeltest                    |      3 | {bio,bio-phylogeny}                                 | 
- lamarc                        |      3 | {bio}                                               | 
+ libncl                        |      3 | {bio}                                               | 
  libpal-java                   |      3 | {bio-dev}                                           | 
  librdp-taxonomy-tree-java     |      3 | {bio-dev}                                           | 
- libsbml                       |      3 | {bio-dev}                                           | 
- maffilter                     |      3 | {bio}                                               | 
  mauve-aligner                 |      3 | {bio}                                               | 
  mhap                          |      3 | {bio-ngs,bio}                                       | 
- mptp                          |      3 | {bio}                                               | 
+ microbegps                    |      3 | {bio}                                               | 
+ mlv-smile                     |      3 | {bio,cloud}                                         | 
+ mrs                           |      3 | {bio}                                               | 
+ murasaki                      |      3 | {bio}                                               | 
  openslide                     |      3 | {imaging-dev}                                       | 
- pal2nal                       |      3 | {bio}                                               | 
- patman                        |      3 | {bio}                                               | 
- pbdagcon                      |      3 | {bio}                                               | 
- phipack                       |      3 | {bio}                                               | 
+ perm                          |      3 | {cloud,bio}                                         | 
+ phybin                        |      3 | {bio}                                               | 
  pilon                         |      3 | {bio}                                               | 
- plasmidseeker                 |      3 | {bio}                                               | 
+ placnet                       |      3 | {bio}                                               | 
  proalign                      |      3 | {bio,bio-phylogeny}                                 | 
- prottest                      |      3 | {bio-phylogeny,bio}                                 | 
- qcumber                       |      3 | {bio}                                               | 
- rambo-k                       |      3 | {bio}                                               | 
- rampler                       |      3 | {bio}                                               | 
+ prottest                      |      3 | {bio,bio-phylogeny}                                 | 
+ pscan-chip                    |      3 | {bio}                                               | 
+ quorum                        |      3 | {bio}                                               | 
  rdp-classifier                |      3 | {bio}                                               | 
  relion                        |      3 | {bio}                                               | 
- samblaster                    |      3 | {bio,covid-19}                                      | 
- scrm                          |      3 | {bio}                                               | 
- seqmagick                     |      3 | {covid-19,bio}                                      | 
- seqtools                      |      3 | {bio}                                               | 
- soapaligner                   |      3 | {bio}                                               | 
- spaced                        |      3 | {bio}                                               | 
- sprai                         |      3 | {bio}                                               | 
- suitename                     |      3 | {bio}                                               | 
+ repeatmasker-recon            |      3 | {bio}                                               | 
+ roguenarok                    |      3 | {bio}                                               | 
+ runcircos-gui                 |      3 | {bio}                                               | 
+ salmon                        |      3 | {bio,covid-19}                                      | 
+ scythe                        |      3 | {bio}                                               | 
+ segemehl                      |      3 | {bio}                                               | 
+ seqsero                       |      3 | {bio}                                               | 
+ sga                           |      3 | {bio}                                               | 
  surankco                      |      3 | {bio}                                               | 
- sweed                         |      3 | {bio}                                               | 
- trace2dbest                   |      3 | {bio}                                               | 
- tvc                           |      3 | {bio}                                               | 
- velvetoptimiser               |      3 | {bio}                                               | 
+ tnseq-transit                 |      3 | {bio,covid-19}                                      | 
+ yaha                          |      3 | {bio}                                               | 
  biosig4c++                    |      2 | {imaging-dev,physics}                               | 
  biosig4c++                    |      2 | {physics,imaging-dev}                               | 
+ blasr                         |      2 | {bio-ngs,bio}                                       | 
  blimps                        |      2 | {bio}                                               | 
- busco                         |      2 | {bio,covid-19}                                      | 
- libbio-mage-utils-perl        |      2 | {bio-dev}                                           | 
+ busco                         |      2 | {covid-19,bio}                                      | 
+ dwgsim                        |      2 | {bio}                                               | 
+ elph                          |      2 | {bio}                                               | 
+ fastml                        |      2 | {bio}                                               | 
+ fsm-lite                      |      2 | {bio}                                               | 
+ hinge                         |      2 | {bio}                                               | 
+ lamarc                        |      2 | {bio}                                               | 
+ libsbml                       |      2 | {bio-dev}                                           | 
  logol                         |      2 | {bio}                                               | 
- mencal                        |      2 | {tools}                                             | 
+ maffilter                     |      2 | {bio}                                               | 
  metaphlan2                    |      2 | {bio}                                               | 
- nanook                        |      2 | {bio}                                               | 
+ mptp                          |      2 | {bio}                                               | 
+ nanook                        |      2 | {covid-19,bio}                                      | 
+ pal2nal                       |      2 | {bio}                                               | 
  papyrus                       |      2 | {imaging-dev}                                       | 
+ patman                        |      2 | {bio}                                               | 
+ pbdagcon                      |      2 | {bio}                                               | 
+ phipack                       |      2 | {bio}                                               | 
+ plasmidseeker                 |      2 | {bio}                                               | 
+ qcumber                       |      2 | {bio}                                               | 
+ rambo-k                       |      2 | {bio}                                               | 
+ rampler                       |      2 | {bio}                                               | 
  relion                        |      2 | {bio}                                               | 
+ samblaster                    |      2 | {covid-19,bio}                                      | 
+ scrm                          |      2 | {bio}                                               | 
+ seqmagick                     |      2 | {bio,covid-19}                                      | 
+ seqtools                      |      2 | {bio}                                               | 
  sift                          |      2 | {bio}                                               | 
+ soapaligner                   |      2 | {bio}                                               | 
+ spaced                        |      2 | {bio}                                               | 
+ sprai                         |      2 | {bio}                                               | 
+ suitename                     |      2 | {bio}                                               | 
+ sweed                         |      2 | {bio}                                               | 
+ trace2dbest                   |      2 | {bio}                                               | 
+ tvc                           |      2 | {bio}                                               | 
+ velvetoptimiser               |      2 | {bio}                                               | 
  acedb                         |      1 | {cloud,bio}                                         | 
  ctn                           |      1 | {imaging-dev}                                       | 
  embassy-phylip                |      1 | {cloud,bio}                                         | 
  emboss-explorer               |      1 | {bio}                                               | 
  gatb-core                     |      1 | {bio-dev}                                           | 
- libchado-perl                 |      1 | {bio-dev}                                           | 
+ libbio-mage-utils-perl        |      1 | {bio-dev}                                           | 
  libctapimkt                   |      1 | {practice}                                          | 
  libmialm                      |      1 | {imaging-dev}                                       | 
  libvistaio                    |      1 | {imaging-dev}                                       | 
  libxdf                        |      1 | {imaging-dev}                                       | 
  murasaki                      |      1 | {bio}                                               | 
  opensurgsim                   |      1 | {imaging-dev}                                       | 
- oscar                         |      1 | {practice,data,tools}                               | 
+ oscar                         |      1 | {data,practice,tools}                               | 
  python-scitrack               |      1 | {covid-19}                                          | 
  relion                        |      1 | {bio}                                               | 
  seqan                         |      1 | {bio-dev}                                           | 
  simpleitk                     |      1 | {imaging-dev}                                       | 
- srf                           |      1 | {bio-dev}                                           | 
  volpack                       |      1 | {imaging-dev}                                       | 
  wtdbg2                        |      1 | {covid-19}                                          | 
  atropos                       |      0 | {bio}                                               | 
@@ -225,8 +222,8 @@ Last-Update: Tue, 09 Jun 2020 01:42:04 +0000
  biosig4c++                    |      0 | {physics}                                           | 
  biosyntax                     |      0 | {bio}                                               | 
  camp                          |      0 | {imaging-dev}                                       | 
- cufflinks                     |      0 | {bio,cloud}                                         | 
- drop-seq                      |      0 | {bio,covid-19}                                      | 
+ cufflinks                     |      0 | {cloud,bio}                                         | 
+ drop-seq                      |      0 | {covid-19,bio}                                      | 
  emmax                         |      0 | {bio}                                               | 
  fis-gtm                       |      0 | {his}                                               | 
  htscodecs                     |      0 | {covid-19,bio-dev}                                  | 
@@ -243,13 +240,14 @@ Last-Update: Tue, 09 Jun 2020 01:42:04 +0000
  libbpp-raa                    |      0 | {bio-dev}                                           | 
  libbpp-seq                    |      0 | {bio-dev}                                           | 
  libbpp-seq-omics              |      0 | {bio-dev}                                           | 
+ libchado-perl                 |      0 | {bio-dev}                                           | 
  libdisorder                   |      0 | {bio-dev}                                           | 
  libgenome                     |      0 | {bio-dev}                                           | 
  libgkarrays                   |      0 | {bio-dev}                                           | 
  libhmsbeagle                  |      0 | {bio-dev}                                           | 
- libics                        |      0 | {imaging-dev,covid-19}                              | 
+ libics                        |      0 | {covid-19,imaging-dev}                              | 
  libjloda-java                 |      0 | {bio-dev}                                           | 
- libmaus2                      |      0 | {covid-19,bio-dev}                                  | 
+ libmaus2                      |      0 | {bio-dev,covid-19}                                  | 
  libmems                       |      0 | {bio-dev}                                           | 
  libmuscle                     |      0 | {bio-dev}                                           | 
  libncl                        |      0 | {bio-dev}                                           | 
@@ -263,7 +261,7 @@ Last-Update: Tue, 09 Jun 2020 01:42:04 +0000
  miaviewit                     |      0 | {imaging-dev}                                       | 
  milib                         |      0 | {bio-dev,covid-19}                                  | 
  mssstest                      |      0 | {tools}                                             | 
- multiqc                       |      0 | {covid-19,bio}                                      | 
+ multiqc                       |      0 | {bio,covid-19}                                      | 
  ncbi-vdb                      |      0 | {bio-dev}                                           | 
  ngs-sdk                       |      0 | {bio-dev}                                           | 
  opencfu                       |      0 | {laboratory}                                        | 
@@ -273,8 +271,8 @@ Last-Update: Tue, 09 Jun 2020 01:42:04 +0000
  pbseqlib                      |      0 | {bio-dev}                                           | 
  pilercr                       |      0 | {bio}                                               | 
  python-py2bit                 |      0 | {bio-dev,bio}                                       | 
- relion                        |      0 | {bio}                                               | 
  relion                        |      0 | {bio-dev}                                           | 
+ relion                        |      0 | {bio}                                               | 
  sambamba                      |      0 | {bio}                                               | 
  samtools-legacy               |      0 | {bio-dev}                                           | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
@@ -282,15 +280,16 @@ Last-Update: Tue, 09 Jun 2020 01:42:04 +0000
  skesa                         |      0 | {bio}                                               | 
  skewer                        |      0 | {bio}                                               | 
  smrtanalysis                  |      0 | {covid-19,bio}                                      | 
- spaln                         |      0 | {covid-19,bio}                                      | 
- stringtie                     |      0 | {bio,covid-19}                                      | 
+ spaln                         |      0 | {bio,covid-19}                                      | 
+ srf                           |      0 | {bio-dev}                                           | 
+ stringtie                     |      0 | {covid-19,bio}                                      | 
  thesias                       |      0 | {bio,covid-19}                                      | 
  varna                         |      0 | {bio}                                               | 
- varscan                       |      0 | {covid-19,bio}                                      | 
+ varscan                       |      0 | {bio,covid-19}                                      | 
  vtk-dicom                     |      0 | {imaging-dev}                                       | 
- bustools                      |     -1 | {covid-19,bio}                                      | 
+ bustools                      |     -1 | {bio,covid-19}                                      | 
  cat-bat                       |     -1 | {covid-19,bio}                                      | 
- flash                         |     -1 | {bio,covid-19}                                      | 
- pycoqc                        |     -1 | {covid-19,bio}                                      | 
-(319 rows)
+ flash                         |     -1 | {covid-19,bio}                                      | 
+ pycoqc                        |     -1 | {bio,covid-19}                                      | 
+(318 rows)
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cb95b019eeabad0c5aac42fb0c3beb5ecfd8989f

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