[med-svn] [Git][med-team/mothur][master] 5 commits: routine-update: debhelper-compat 13

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / mothur


Commits:
0009cb3a by Andreas Tille at 2020-06-09T16:15:00+02:00
routine-update: debhelper-compat 13

- - - - -
e06b3643 by Andreas Tille at 2020-06-09T16:15:04+02:00
routine-update: Add salsa-ci file

- - - - -
7e76d3ee by Andreas Tille at 2020-06-09T16:15:14+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit.

Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html

- - - - -
16423c88 by Andreas Tille at 2020-06-09T16:15:14+02:00
Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
- - - - -
54c077bd by Andreas Tille at 2020-06-09T16:24:49+02:00
Fix include

- - - - -


6 changed files:

- debian/changelog
- debian/control
- + debian/patches/0002-Fix-include.patch
- debian/patches/series
- + debian/salsa-ci.yml
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+mothur (1.44.1-2) UNRELEASED; urgency=medium
+
+  * debhelper-compat 13 (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Set upstream metadata fields: Bug-Database, Bug-Submit.
+  * Remove obsolete fields Contact, Name from debian/upstream/metadata (already
+    present in machine-readable debian/copyright).
+  * Fix include
+
+ -- Andreas Tille <tille at debian.org>  Tue, 09 Jun 2020 16:15:00 +0200
+
 mothur (1.44.1-1) unstable; urgency=medium
 
   * Update d/watch to cover releases such as "v.1.44.1"


=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Uploaders: Steffen Moeller <moeller at debian.org>,
            Tomasz Buchert <tomasz at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                gfortran,
                libboost-iostreams-dev,
                libreadline-dev,


=====================================
debian/patches/0002-Fix-include.patch
=====================================
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 09 Jun 2020 16:15:15 +0200
+Description: Fix include
+
+--- a/Makefile
++++ b/Makefile
+@@ -107,7 +107,7 @@ endif
+     subdirs :=  $(sort $(dir $(filter-out  $(skipUchime), $(wildcard source/*/))))
+     subDirIncludes = $(patsubst %, -I %, $(subdirs))
+     subDirLinking =  $(patsubst %, -L%, $(subdirs))
+-    CXXFLAGS += -I. $(subDirIncludes)
++    CXXFLAGS += -Isource $(subDirIncludes)
+     LDFLAGS += $(subDirLinking)
+ 
+ 


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 0001-Add-hardening-flags.patch
+0002-Fix-include.patch


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/upstream/metadata
=====================================
@@ -1,5 +1,5 @@
-Contact: Patrick D. Schloss <pschloss at umich.edu>
-Name: Mothur
+Bug-Database: https://github.com/mothur/mothur/issues
+Bug-Submit: https://github.com/mothur/mothur/issues/new
 Reference:
  Author: >
   Patrick D Schloss and Sarah L Westcott and Thomas Ryabin and Justine R



View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/6cdbe2d06ea8596bb3a7e5e098bc8f6a756e4a9b...54c077bdb5909ff33920df24a3aa307c8663fd44

-- 
View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/6cdbe2d06ea8596bb3a7e5e098bc8f6a756e4a9b...54c077bdb5909ff33920df24a3aa307c8663fd44
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