Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3fb1e30e by Andreas Tille at 2020-06-10T13:46:03+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,34 +1,36 @@
-Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
+Last-Update: Wed, 10 Jun 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {covid-19,imaging} |
- orthanc | 89 | {imaging,practice,covid-19} |
- gdcm | 52 | {imaging-dev} |
- orthanc-wsi | 40 | {laboratory,practice,imaging,oncology,covid-19,his} |
- htsjdk | 32 | {bio-dev} |
- dcm2niix | 28 | {imaging} |
- dicomscope | 28 | {imaging} |
- dicom3tools | 27 | {imaging} |
- gnumed-server | 19 | {practice,covid-19} |
- gdcm | 18 | {imaging,covid-19} |
+ dcmtk | 177 | {imaging,covid-19} |
+ orthanc | 89 | {practice,imaging,covid-19} |
+ gdcm | 50 | {imaging-dev} |
+ orthanc-wsi | 40 | {his,laboratory,oncology,covid-19,imaging,practice} |
+ htsjdk | 33 | {bio-dev} |
+ dcm2niix | 27 | {imaging} |
+ dicom3tools | 26 | {imaging} |
+ dicomscope | 26 | {imaging} |
+ gnumed-server | 19 | {covid-19,practice} |
+ gdcm | 17 | {covid-19,imaging} |
invesalius | 16 | {imaging} |
- minc-tools | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
insighttoolkit4 | 15 | {imaging-dev} |
- plastimatch | 13 | {imaging} |
+ minc-tools | 15 | {imaging} |
adun.app | 12 | {bio} |
- king | 12 | {imaging,typesetting} |
- vtk-dicom | 12 | {imaging} |
- gdcm | 11 | {imaging-dev} |
- openslide | 11 | {imaging} |
- pixelmed | 11 | {imaging} |
- biosig4c++ | 10 | {imaging,physics} |
+ gdcm | 12 | {imaging-dev} |
+ king | 12 | {typesetting,imaging} |
+ plastimatch | 11 | {imaging} |
+ vtk-dicom | 11 | {imaging} |
+ openslide | 10 | {imaging} |
+ pixelmed | 10 | {imaging} |
+ biosig4c++ | 9 | {physics,imaging} |
jebl2 | 9 | {bio-dev} |
biojava-live | 8 | {bio-dev} |
+ ngs-sdk | 8 | {bio-dev} |
obitools | 8 | {bio} |
psychopy | 8 | {psychology} |
cluster3 | 7 | {bio} |
+ orthanc-webviewer | 7 | {imaging} |
radiant | 7 | {bio} |
stacks | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
@@ -38,32 +40,33 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
indelible | 6 | {bio} |
libminc | 6 | {imaging-dev} |
librg-utils-perl | 6 | {bio} |
- melting | 6 | {bio,cloud} |
- mipe | 6 | {cloud,bio} |
+ melting | 6 | {cloud,bio} |
+ mipe | 6 | {bio,cloud} |
ncbi-seg | 6 | {bio} |
- ngs-sdk | 6 | {bio-dev} |
- orthanc-webviewer | 6 | {imaging} |
- sibsim4 | 6 | {cloud,bio} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
+ sibsim4 | 6 | {bio,cloud} |
treeview | 6 | {bio,bio-phylogeny} |
- vsearch | 6 | {bio,covid-19} |
- ampliconnoise | 5 | {bio,cloud} |
+ vsearch | 6 | {covid-19,bio} |
+ ampliconnoise | 5 | {cloud,bio} |
arden | 5 | {bio,cloud} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
- bio-tradis | 5 | {bio,bio-dev} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
+ bio-tradis | 5 | {bio-dev,bio} |
bppsuite | 5 | {bio} |
brig | 5 | {bio} |
+ delly | 5 | {bio,covid-19} |
ea-utils | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domsearch | 5 | {bio,cloud} |
maqview | 5 | {bio} |
nutsqlite | 5 | {tools} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
orthanc-mysql | 5 | {imaging} |
- phyutility | 5 | {bio,cloud} |
+ phyutility | 5 | {cloud,bio} |
piler | 5 | {bio} |
+ rdp-alignment | 5 | {bio} |
+ rdp-readseq | 5 | {bio} |
sickle | 5 | {bio} |
- sigma-align | 5 | {cloud,bio-phylogeny,bio} |
+ sigma-align | 5 | {bio-phylogeny,bio,cloud} |
snap-aligner | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
abacas | 4 | {covid-19,bio} |
@@ -75,73 +78,72 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
bitseq | 4 | {bio} |
daligner | 4 | {bio-ngs,bio} |
dazzdb | 4 | {bio} |
- delly | 4 | {covid-19,bio} |
- dicompyler | 4 | {oncology} |
edtsurf | 4 | {bio} |
- embassy-domalign | 4 | {bio,cloud} |
+ embassy-domalign | 4 | {cloud,bio} |
estscan | 4 | {bio} |
gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
king-probe | 4 | {bio} |
lagan | 4 | {bio} |
- libdivsufsort | 4 | {bio-dev} |
- mapsembler2 | 4 | {bio,cloud} |
+ mapsembler2 | 4 | {cloud,bio} |
+ mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
orthanc-postgresql | 4 | {imaging} |
- paraclu | 4 | {bio,cloud} |
+ paraclu | 4 | {cloud,bio} |
phast | 4 | {bio} |
predictprotein | 4 | {bio} |
prime-phylo | 4 | {bio,cloud} |
- probabel | 4 | {cloud,bio} |
+ probabel | 4 | {bio,cloud} |
pscan-tfbs | 4 | {bio} |
pymia | 4 | {imaging-dev} |
qrisk2 | 4 | {practice} |
- rdp-alignment | 4 | {bio} |
- rdp-readseq | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
+ rtax | 4 | {bio,cloud} |
saint | 4 | {bio} |
+ seqsero | 4 | {bio} |
seqtools | 4 | {bio} |
soapsnp | 4 | {bio} |
squizz | 4 | {bio,cloud} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
transtermhp | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
+ zalign | 4 | {bio,cloud} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
bio-rainbow | 3 | {bio} |
canu | 3 | {bio} |
centrifuge | 3 | {covid-19,bio} |
- clonalframeml | 3 | {covid-19,bio} |
+ clonalframeml | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
dascrubber | 3 | {bio} |
+ dicompyler | 3 | {oncology} |
dindel | 3 | {bio} |
- gasic | 3 | {bio,cloud} |
ghmm | 3 | {bio} |
harvest-tools | 3 | {bio} |
ipig | 3 | {bio} |
jaligner | 3 | {bio} |
jellyfish1 | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
+ libdivsufsort | 3 | {bio-dev} |
libncl | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ maffilter | 3 | {bio} |
mauve-aligner | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
- mlv-smile | 3 | {bio,cloud} |
- mrs | 3 | {bio} |
+ mlv-smile | 3 | {cloud,bio} |
murasaki | 3 | {bio} |
openslide | 3 | {imaging-dev} |
- perm | 3 | {cloud,bio} |
+ perm | 3 | {bio,cloud} |
phybin | 3 | {bio} |
pilon | 3 | {bio} |
placnet | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
- prottest | 3 | {bio,bio-phylogeny} |
+ prottest | 3 | {bio-phylogeny,bio} |
pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
+ rambo-k | 3 | {bio} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
repeatmasker-recon | 3 | {bio} |
@@ -150,12 +152,10 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
salmon | 3 | {bio,covid-19} |
scythe | 3 | {bio} |
segemehl | 3 | {bio} |
- seqsero | 3 | {bio} |
sga | 3 | {bio} |
surankco | 3 | {bio} |
- tnseq-transit | 3 | {bio,covid-19} |
+ tnseq-transit | 3 | {covid-19,bio} |
yaha | 3 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
biosig4c++ | 2 | {physics,imaging-dev} |
blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
@@ -166,12 +166,12 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
fsm-lite | 2 | {bio} |
hinge | 2 | {bio} |
lamarc | 2 | {bio} |
+ libbio-mage-utils-perl | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
logol | 2 | {bio} |
- maffilter | 2 | {bio} |
metaphlan2 | 2 | {bio} |
mptp | 2 | {bio} |
- nanook | 2 | {covid-19,bio} |
+ nanook | 2 | {bio,covid-19} |
pal2nal | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
patman | 2 | {bio} |
@@ -179,12 +179,11 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
phipack | 2 | {bio} |
plasmidseeker | 2 | {bio} |
qcumber | 2 | {bio} |
- rambo-k | 2 | {bio} |
rampler | 2 | {bio} |
relion | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ samblaster | 2 | {bio,covid-19} |
scrm | 2 | {bio} |
- seqmagick | 2 | {bio,covid-19} |
+ seqmagick | 2 | {covid-19,bio} |
seqtools | 2 | {bio} |
sift | 2 | {bio} |
soapaligner | 2 | {bio} |
@@ -197,17 +196,17 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
velvetoptimiser | 2 | {bio} |
acedb | 1 | {cloud,bio} |
ctn | 1 | {imaging-dev} |
- embassy-phylip | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmialm | 1 | {imaging-dev} |
libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {data,practice,tools} |
+ oscar | 1 | {practice,tools,data} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
@@ -222,11 +221,11 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
+ cufflinks | 0 | {bio,cloud} |
drop-seq | 0 | {covid-19,bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
ivar | 0 | {covid-19} |
kma | 0 | {bio} |
kmerresistance | 0 | {bio} |
@@ -240,14 +239,13 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -259,7 +257,7 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
multiqc | 0 | {bio,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
@@ -271,25 +269,27 @@ Last-Update: Wed, 10 Jun 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
python-py2bit | 0 | {bio-dev,bio} |
- relion | 0 | {bio-dev} |
+ q2templates | 0 | {bio} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
stringtie | 0 | {covid-19,bio} |
thesias | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {covid-19,bio} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
- bustools | -1 | {bio,covid-19} |
+ bustools | -1 | {covid-19,bio} |
cat-bat | -1 | {covid-19,bio} |
- flash | -1 | {covid-19,bio} |
+ flash | -1 | {bio,covid-19} |
pycoqc | -1 | {bio,covid-19} |
(318 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3fb1e30e4cf47e6ee22d9cdd698d29f755334a0f
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