Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
56c35ccc by Andreas Tille at 2020-06-14T13:45:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,89 +1,77 @@
-Last-Update: Sun, 14 Jun 2020 01:42:04 +0000
+Last-Update: Sun, 14 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 174 | {covid-19,imaging} |
- orthanc | 88 | {imaging,covid-19,practice} |
- gdcm | 50 | {imaging-dev} |
- orthanc-wsi | 37 | {practice,his,laboratory,imaging,covid-19,oncology} |
+ dcmtk | 178 | {imaging,covid-19} |
+ orthanc | 87 | {covid-19,imaging,practice} |
+ gdcm | 51 | {imaging-dev} |
+ orthanc-wsi | 36 | {laboratory,imaging,practice,covid-19,oncology,his} |
htsjdk | 34 | {bio-dev} |
dcm2niix | 26 | {imaging} |
- dicom3tools | 25 | {imaging} |
+ dicom3tools | 26 | {imaging} |
dicomscope | 24 | {imaging} |
- gdcm | 21 | {imaging,covid-19} |
- gnumed-server | 18 | {covid-19,practice} |
+ gdcm | 22 | {covid-19,imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
ngs-sdk | 17 | {bio-dev} |
+ insighttoolkit4 | 16 | {imaging-dev} |
invesalius | 16 | {imaging} |
minc-tools | 15 | {imaging} |
- insighttoolkit4 | 14 | {imaging-dev} |
gdcm | 13 | {imaging-dev} |
king | 12 | {imaging,typesetting} |
- plastimatch | 12 | {imaging} |
adun.app | 11 | {bio} |
- jebl2 | 11 | {bio-dev} |
+ plastimatch | 11 | {imaging} |
biosig4c++ | 10 | {physics,imaging} |
+ jebl2 | 10 | {bio-dev} |
openslide | 10 | {imaging} |
pixelmed | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
biojava-live | 8 | {bio-dev} |
+ melting | 8 | {cloud,bio} |
psychopy | 8 | {psychology} |
- radiant | 8 | {bio} |
- biomaj3-cli | 7 | {cloud} |
- cluster3 | 7 | {bio} |
- ecopcr | 7 | {bio} |
- fastlink | 7 | {bio,cloud} |
+ dicompyler | 7 | {oncology} |
+ fastlink | 7 | {cloud,bio} |
librg-utils-perl | 7 | {bio} |
- melting | 7 | {bio,cloud} |
- mipe | 7 | {cloud,bio} |
ncbi-seg | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
- obitools | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- sibsim4 | 7 | {bio,cloud} |
+ radiant | 7 | {bio} |
+ sibsim4 | 7 | {cloud,bio} |
vsearch | 7 | {bio,covid-19} |
- alter-sequence-alignment | 6 | {bio} |
- arden | 6 | {bio,cloud} |
- beast-mcmc | 6 | {bio-phylogeny,bio} |
- bppsuite | 6 | {bio} |
+ biomaj3-cli | 6 | {cloud} |
brig | 6 | {bio} |
- dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
- embassy-domainatrix | 6 | {bio,cloud} |
- embassy-domsearch | 6 | {bio,cloud} |
+ ecopcr | 6 | {bio} |
libminc | 6 | {imaging-dev} |
maqview | 6 | {bio} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
- phyutility | 6 | {bio,cloud} |
+ mipe | 6 | {bio,cloud} |
+ obitools | 6 | {bio} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
+ phyutility | 6 | {cloud,bio} |
piler | 6 | {bio} |
- sickle | 6 | {bio} |
sigma-align | 6 | {bio,bio-phylogeny,cloud} |
+ snap-aligner | 6 | {bio} |
spread-phy | 6 | {bio-phylogeny,bio} |
- treeview | 6 | {bio-phylogeny,bio} |
- ampliconnoise | 5 | {cloud,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ alter-sequence-alignment | 5 | {bio} |
+ ampliconnoise | 5 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
+ arden | 5 | {cloud,bio} |
bandage | 5 | {bio} |
- beads | 5 | {bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-daemon | 5 | {bio} |
- bio-tradis | 5 | {bio-dev,bio} |
- bitseq | 5 | {bio} |
- daligner | 5 | {bio-ngs,bio} |
- dazzdb | 5 | {bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
delly | 5 | {bio,covid-19} |
- edtsurf | 5 | {bio} |
elastix | 5 | {imaging} |
- embassy-domalign | 5 | {cloud,bio} |
- estscan | 5 | {bio} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
neobio | 5 | {cloud,bio} |
nutsqlite | 5 | {tools} |
orthanc-mysql | 5 | {imaging} |
- paraclu | 5 | {bio,cloud} |
- phast | 5 | {bio} |
predictprotein | 5 | {bio} |
- probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
pymia | 5 | {imaging-dev} |
rdp-alignment | 5 | {bio} |
@@ -91,88 +79,97 @@ Last-Update: Sun, 14 Jun 2020 01:42:04 +0000
rtax | 5 | {cloud,bio} |
saint | 5 | {bio} |
seqsero | 5 | {bio} |
- snap-aligner | 5 | {bio} |
- soapsnp | 5 | {bio} |
+ sickle | 5 | {bio} |
squizz | 5 | {cloud,bio} |
stacks | 5 | {bio} |
staden | 5 | {bio} |
tracetuner | 5 | {bio} |
transtermhp | 5 | {bio} |
- zalign | 5 | {cloud,bio} |
- abacas | 4 | {covid-19,bio} |
+ abacas | 4 | {bio,covid-19} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bart-view | 4 | {imaging} |
+ beads | 4 | {bio} |
beast2-mcmc | 4 | {bio} |
bio-rainbow | 4 | {bio} |
+ bitseq | 4 | {bio} |
canu | 4 | {bio} |
centrifuge | 4 | {covid-19,bio} |
- clonalframeml | 4 | {bio,covid-19} |
+ clonalframeml | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
+ daligner | 4 | {bio-ngs,bio} |
dascrubber | 4 | {bio} |
+ dazzdb | 4 | {bio} |
dindel | 4 | {bio} |
+ edtsurf | 4 | {bio} |
+ estscan | 4 | {bio} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
jaligner | 4 | {bio} |
jellyfish1 | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
libncl | 4 | {bio} |
- libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio-ngs,bio} |
+ mhap | 4 | {bio,bio-ngs} |
microbegps | 4 | {bio} |
mlv-smile | 4 | {cloud,bio} |
- mrs | 4 | {bio} |
murasaki | 4 | {bio} |
openslide | 4 | {imaging-dev} |
orthanc-postgresql | 4 | {imaging} |
- perm | 4 | {cloud,bio} |
- phybin | 4 | {bio} |
- pilon | 4 | {bio} |
+ paraclu | 4 | {cloud,bio} |
+ perm | 4 | {bio,cloud} |
+ phast | 4 | {bio} |
placnet | 4 | {bio} |
prime-phylo | 4 | {bio,cloud} |
- proalign | 4 | {bio,bio-phylogeny} |
- prottest | 4 | {bio,bio-phylogeny} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ probabel | 4 | {cloud,bio} |
pscan-chip | 4 | {bio} |
qrisk2 | 4 | {practice} |
quorum | 4 | {bio} |
rambo-k | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
- repeatmasker-recon | 4 | {bio} |
- roguenarok | 4 | {bio} |
runcircos-gui | 4 | {bio} |
salmon | 4 | {bio,covid-19} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
+ soapsnp | 4 | {bio} |
surankco | 4 | {bio} |
tnseq-transit | 4 | {bio,covid-19} |
yaha | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
blasr | 3 | {bio-ngs,bio} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
hinge | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
+ libpal-java | 3 | {bio-dev} |
logol | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mptp | 3 | {bio} |
+ mrs | 3 | {bio} |
nanook | 3 | {covid-19,bio} |
patman | 3 | {bio} |
pbdagcon | 3 | {bio} |
phipack | 3 | {bio} |
+ phybin | 3 | {bio} |
+ pilon | 3 | {bio} |
plasmidseeker | 3 | {bio} |
+ prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
rampler | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
+ repeatmasker-recon | 3 | {bio} |
+ roguenarok | 3 | {bio} |
+ samblaster | 3 | {bio,covid-19} |
scrm | 3 | {bio} |
- seqmagick | 3 | {covid-19,bio} |
+ seqmagick | 3 | {bio,covid-19} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
@@ -181,8 +178,9 @@ Last-Update: Sun, 14 Jun 2020 01:42:04 +0000
tvc | 3 | {bio} |
velvetoptimiser | 3 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
blimps | 2 | {bio} |
- busco | 2 | {bio,covid-19} |
+ busco | 2 | {covid-19,bio} |
embassy-phylip | 2 | {bio,cloud} |
emboss-explorer | 2 | {bio} |
libsbml | 2 | {bio-dev} |
@@ -202,14 +200,14 @@ Last-Update: Sun, 14 Jun 2020 01:42:04 +0000
murasaki | 1 | {bio} |
ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {data,practice,tools} |
+ oscar | 1 | {tools,data,practice} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
- acedb | 0 | {bio,cloud} |
+ acedb | 0 | {cloud,bio} |
atropos | 0 | {bio} |
augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
@@ -255,7 +253,7 @@ Last-Update: Sun, 14 Jun 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
multiqc | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
@@ -265,9 +263,9 @@ Last-Update: Sun, 14 Jun 2020 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- python-py2bit | 0 | {bio,bio-dev} |
+ python-py2bit | 0 | {bio-dev,bio} |
q2templates | 0 | {bio} |
- quicktree | 0 | {bio-phylogeny,bio,covid-19} |
+ quicktree | 0 | {covid-19,bio,bio-phylogeny} |
relion | 0 | {bio-dev} |
relion | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -276,17 +274,17 @@ Last-Update: Sun, 14 Jun 2020 01:42:04 +0000
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
- spaln | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
stringtie | 0 | {covid-19,bio} |
- thesias | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
+ tophat-recondition | 0 | {covid-19,bio} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
- bustools | -1 | {covid-19,bio} |
- flash | -1 | {bio,covid-19} |
- pycoqc | -1 | {covid-19,bio} |
-(315 rows)
+ bustools | -1 | {bio,covid-19} |
+ flash | -1 | {covid-19,bio} |
+ pycoqc | -1 | {bio,covid-19} |
+(313 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/56c35ccc8c8ac8cb1a93179b6638a9d11e13a99b
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