Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
11e553e5 by Andreas Tille at 2020-06-15T13:51:06+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,88 +1,90 @@
-Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
+Last-Update: Mon, 15 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 178 | {imaging,covid-19} |
- orthanc | 87 | {covid-19,imaging,practice} |
- gdcm | 51 | {imaging-dev} |
- orthanc-wsi | 36 | {laboratory,imaging,practice,covid-19,oncology,his} |
- htsjdk | 34 | {bio-dev} |
- dcm2niix | 26 | {imaging} |
- dicom3tools | 26 | {imaging} |
- dicomscope | 24 | {imaging} |
- gdcm | 22 | {covid-19,imaging} |
- gnumed-server | 17 | {covid-19,practice} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 90 | {covid-19,imaging,practice} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 36 | {covid-19,his,imaging,oncology,practice,laboratory} |
+ htsjdk | 35 | {bio-dev} |
+ dcm2niix | 25 | {imaging} |
+ dicom3tools | 24 | {imaging} |
+ dicomscope | 23 | {imaging} |
+ gdcm | 19 | {covid-19,imaging} |
+ gnumed-server | 18 | {covid-19,practice} |
ngs-sdk | 17 | {bio-dev} |
- insighttoolkit4 | 16 | {imaging-dev} |
- invesalius | 16 | {imaging} |
- minc-tools | 15 | {imaging} |
+ invesalius | 15 | {imaging} |
+ insighttoolkit4 | 14 | {imaging-dev} |
+ minc-tools | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- king | 12 | {imaging,typesetting} |
adun.app | 11 | {bio} |
+ jebl2 | 11 | {bio-dev} |
plastimatch | 11 | {imaging} |
- biosig4c++ | 10 | {physics,imaging} |
- jebl2 | 10 | {bio-dev} |
- openslide | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
- vtk-dicom | 10 | {imaging} |
+ king | 10 | {typesetting,imaging} |
+ biosig4c++ | 9 | {imaging,physics} |
+ openslide | 9 | {imaging} |
+ pixelmed | 9 | {imaging} |
+ vtk-dicom | 9 | {imaging} |
biojava-live | 8 | {bio-dev} |
+ librg-utils-perl | 8 | {bio} |
melting | 8 | {cloud,bio} |
psychopy | 8 | {psychology} |
dicompyler | 7 | {oncology} |
fastlink | 7 | {cloud,bio} |
- librg-utils-perl | 7 | {bio} |
ncbi-seg | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
orthanc-webviewer | 7 | {imaging} |
radiant | 7 | {bio} |
- sibsim4 | 7 | {cloud,bio} |
+ sibsim4 | 7 | {bio,cloud} |
vsearch | 7 | {bio,covid-19} |
+ ampliconnoise | 6 | {cloud,bio} |
biomaj3-cli | 6 | {cloud} |
brig | 6 | {bio} |
ea-utils | 6 | {bio} |
ecopcr | 6 | {bio} |
- libminc | 6 | {imaging-dev} |
maqview | 6 | {bio} |
- mipe | 6 | {bio,cloud} |
+ mipe | 6 | {cloud,bio} |
obitools | 6 | {bio} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
- phyutility | 6 | {cloud,bio} |
+ orthanc-dicomweb | 6 | {imaging,covid-19} |
+ phyutility | 6 | {bio,cloud} |
piler | 6 | {bio} |
- sigma-align | 6 | {bio,bio-phylogeny,cloud} |
+ pymia | 6 | {imaging-dev} |
+ saint | 6 | {bio} |
+ sigma-align | 6 | {bio-phylogeny,bio,cloud} |
snap-aligner | 6 | {bio} |
- spread-phy | 6 | {bio-phylogeny,bio} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
+ staden | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
alter-sequence-alignment | 5 | {bio} |
- ampliconnoise | 5 | {bio,cloud} |
- anfo | 5 | {cloud,bio} |
- arden | 5 | {cloud,bio} |
+ anfo | 5 | {bio,cloud} |
+ arden | 5 | {bio,cloud} |
bandage | 5 | {bio} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-daemon | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ clonalorigin | 5 | {bio} |
delly | 5 | {bio,covid-19} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {cloud,bio} |
- embassy-domalign | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
gatb-core | 5 | {bio} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
- neobio | 5 | {cloud,bio} |
+ libminc | 5 | {imaging-dev} |
+ neobio | 5 | {bio,cloud} |
nutsqlite | 5 | {tools} |
orthanc-mysql | 5 | {imaging} |
predictprotein | 5 | {bio} |
+ pscan-chip | 5 | {bio} |
pscan-tfbs | 5 | {bio} |
- pymia | 5 | {imaging-dev} |
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
- rtax | 5 | {cloud,bio} |
- saint | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
seqsero | 5 | {bio} |
sickle | 5 | {bio} |
- squizz | 5 | {cloud,bio} |
+ squizz | 5 | {bio,cloud} |
stacks | 5 | {bio} |
- staden | 5 | {bio} |
tracetuner | 5 | {bio} |
transtermhp | 5 | {bio} |
abacas | 4 | {bio,covid-19} |
@@ -95,8 +97,7 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
bitseq | 4 | {bio} |
canu | 4 | {bio} |
centrifuge | 4 | {covid-19,bio} |
- clonalframeml | 4 | {covid-19,bio} |
- clonalorigin | 4 | {bio} |
+ clonalframeml | 4 | {bio,covid-19} |
daligner | 4 | {bio-ngs,bio} |
dascrubber | 4 | {bio} |
dazzdb | 4 | {bio} |
@@ -113,9 +114,11 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio,bio-ngs} |
+ mhap | 4 | {bio-ngs,bio} |
microbegps | 4 | {bio} |
mlv-smile | 4 | {cloud,bio} |
+ mptp | 4 | {bio} |
+ mrs | 4 | {bio} |
murasaki | 4 | {bio} |
openslide | 4 | {imaging-dev} |
orthanc-postgresql | 4 | {imaging} |
@@ -126,35 +129,32 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
prime-phylo | 4 | {bio,cloud} |
proalign | 4 | {bio-phylogeny,bio} |
probabel | 4 | {cloud,bio} |
- pscan-chip | 4 | {bio} |
qrisk2 | 4 | {practice} |
quorum | 4 | {bio} |
rambo-k | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
+ rtax | 4 | {cloud,bio} |
+ salmon | 4 | {covid-19,bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
soapsnp | 4 | {bio} |
surankco | 4 | {bio} |
- tnseq-transit | 4 | {bio,covid-19} |
+ tnseq-transit | 4 | {covid-19,bio} |
yaha | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
- blasr | 3 | {bio-ngs,bio} |
+ zalign | 4 | {bio,cloud} |
+ blasr | 3 | {bio,bio-ngs} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
hinge | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
logol | 3 | {bio} |
metaphlan2 | 3 | {bio} |
- mptp | 3 | {bio} |
- mrs | 3 | {bio} |
nanook | 3 | {covid-19,bio} |
patman | 3 | {bio} |
pbdagcon | 3 | {bio} |
@@ -167,9 +167,9 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
rampler | 3 | {bio} |
repeatmasker-recon | 3 | {bio} |
roguenarok | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
+ samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
- seqmagick | 3 | {bio,covid-19} |
+ seqmagick | 3 | {covid-19,bio} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
@@ -178,9 +178,8 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
tvc | 3 | {bio} |
velvetoptimiser | 3 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
- biosig4c++ | 2 | {physics,imaging-dev} |
blimps | 2 | {bio} |
- busco | 2 | {covid-19,bio} |
+ busco | 2 | {bio,covid-19} |
embassy-phylip | 2 | {bio,cloud} |
emboss-explorer | 2 | {bio} |
libsbml | 2 | {bio-dev} |
@@ -200,16 +199,16 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
murasaki | 1 | {bio} |
ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {tools,data,practice} |
+ oscar | 1 | {data,practice,tools} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
- acedb | 0 | {cloud,bio} |
+ acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
- augur | 0 | {bio,covid-19} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -217,10 +216,10 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {bio,cloud} |
- drop-seq | 0 | {covid-19,bio} |
+ drop-seq | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
ivar | 0 | {covid-19} |
kma | 0 | {bio} |
kmerresistance | 0 | {bio} |
@@ -239,7 +238,7 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
@@ -255,7 +254,7 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {covid-19,bio} |
+ multiqc | 0 | {bio,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -265,7 +264,7 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
pilercr | 0 | {bio} |
python-py2bit | 0 | {bio-dev,bio} |
q2templates | 0 | {bio} |
- quicktree | 0 | {covid-19,bio,bio-phylogeny} |
+ quicktree | 0 | {bio,bio-phylogeny,covid-19} |
relion | 0 | {bio-dev} |
relion | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -275,16 +274,16 @@ Last-Update: Mon, 15 Jun 2020 01:42:03 +0000
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {covid-19,bio} |
+ spaln | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
- stringtie | 0 | {covid-19,bio} |
- thesias | 0 | {covid-19,bio} |
- tophat-recondition | 0 | {covid-19,bio} |
+ stringtie | 0 | {bio,covid-19} |
+ thesias | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
- bustools | -1 | {bio,covid-19} |
+ bustools | -1 | {covid-19,bio} |
flash | -1 | {covid-19,bio} |
pycoqc | -1 | {bio,covid-19} |
-(313 rows)
+(312 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/11e553e560652619a9aaec3db053ab309ebc1bb9
--
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