[med-svn] [Git][med-team/htsjdk][master] 4 commits: New upstream version 2.22.0+dfsg

[Olivier Sallou]

Olivier Sallou pushed to branch master at Debian Med / htsjdk


Commits:
cd038d1c by Olivier Sallou at 2020-05-29T11:07:37+00:00
New upstream version 2.22.0+dfsg
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a2864851 by Olivier Sallou at 2020-05-29T11:08:11+00:00
Update upstream source from tag 'upstream/2.22.0+dfsg'

Update to upstream version '2.22.0+dfsg'
with Debian dir 885909f1d3fabecdc94be6b4b79054cac44392aa
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d5151e88 by Olivier Sallou at 2020-06-16T04:18:18+00:00
new upstream release 2.22.0+dfsg

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010096d3 by Olivier Sallou at 2020-06-16T04:57:24+00:00
new upstream release 2.22.0, compiles but still to be tested against picard-tools

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30 changed files:

- .github/ISSUE_TEMPLATE.md
- .github/PULL_REQUEST_TEMPLATE.md
- .travis.yml
- + CODE_OF_CONDUCT.md
- README.md
- build.gradle
- debian/changelog
- debian/patches/10-build.xml.patch
- debian/patches/100-fix-java11
- + debian/patches/120-fix-build.patch
- debian/patches/13-skip_network_tests
- debian/patches/20-fix-version.patch
- debian/patches/30-disable-scalatest.patch
- debian/patches/40-fix-java9
- debian/patches/60-enable-tests
- debian/patches/70-removesometests-testng.patch
- debian/patches/90-disable-testftp.patch
- debian/patches/92-disable-testhttp.patch
- debian/patches/disable-network-tests.diff
- debian/patches/series
- + gradle/spotbugs-exclude.xml
- gradle/wrapper/gradle-wrapper.properties
- gradlew
- + java-style-eclipse.xml
- + java-style-intellij.xml
- + scripts/install-samtools.sh
- src/main/java/htsjdk/samtools/AbstractBAMFileIndex.java
- src/main/java/htsjdk/samtools/BAMFileConstants.java
- src/main/java/htsjdk/samtools/BAMFileReader.java
- src/main/java/htsjdk/samtools/BAMFileWriter.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/ece5838ca4f2de7dea357cdef51423aec07c7e79...010096d34276b7646e8c4ee7a2e414b2977a25f5

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View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/ece5838ca4f2de7dea357cdef51423aec07c7e79...010096d34276b7646e8c4ee7a2e414b2977a25f5
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