[med-svn] [Git][med-team/bcftools][master] 9 commits: Depends on Perl demoted to Recommends
Andreas Tille
gitlab at salsa.debian.org
Wed Jun 17 11:19:38 BST 2020
Andreas Tille pushed to branch master at Debian Med / bcftools
Commits:
f6b9f2e2 by Andreas Tille at 2020-06-17T11:24:42+02:00
Depends on Perl demoted to Recommends
- - - - -
c7d97d8a by Andreas Tille at 2020-06-17T11:24:55+02:00
routine-update: Standards-Version: 4.5.0
- - - - -
342706c3 by Andreas Tille at 2020-06-17T11:24:55+02:00
routine-update: debhelper-compat 13
- - - - -
fe05e7ba by Andreas Tille at 2020-06-17T11:24:59+02:00
routine-update: Add salsa-ci file
- - - - -
18e12029 by Andreas Tille at 2020-06-17T11:24:59+02:00
routine-update: Rules-Requires-Root: no
- - - - -
d27a93df by Andreas Tille at 2020-06-17T11:25:01+02:00
debian/copyright: use spaces rather than tabs to start continuation lines.
Fixes: lintian: tab-in-license-text
See-also: https://lintian.debian.org/tags/tab-in-license-text.html
- - - - -
ef25c900 by Andreas Tille at 2020-06-17T11:25:07+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
- - - - -
afc04fe7 by Andreas Tille at 2020-06-17T11:40:28+02:00
Fix Perl recommends
- - - - -
46029520 by Andreas Tille at 2020-06-17T11:46:45+02:00
Close bug and upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/salsa-ci.yml
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+bcftools (1.10.2-3) unstable; urgency=medium
+
+ * Team upload.
+ * Depends on Perl demoted to Recommends
+ Closes: #962834
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * debian/copyright: use spaces rather than tabs to start continuation lines.
+ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+ Repository-Browse.
+
+ -- Andreas Tille <tille at debian.org> Wed, 17 Jun 2020 11:41:35 +0200
+
bcftools (1.10.2-2) unstable; urgency=medium
* Fix build on i386 by using SSE2
=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Michael R. Crusoe <crusoe at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
zlib1g-dev,
libbz2-dev,
liblzma-dev,
@@ -11,17 +11,18 @@ Build-Depends: debhelper-compat (= 12),
libgsl-dev,
tabix <!nocheck>,
libio-pty-perl <!nocheck>
-Standards-Version: 4.4.1
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/bcftools
Vcs-Git: https://salsa.debian.org/med-team/bcftools.git
Homepage: http://samtools.github.io/bcftools/
+Rules-Requires-Root: no
Package: bcftools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
- ${perl:Depends},
sse2-support [i386]
+Recommends: perl
Suggests:
# These are needed for plot-vcfstats
python,
=====================================
debian/copyright
=====================================
@@ -4,17 +4,17 @@ Source: https://github.com/samtools/bcftools
Files: *
Copyright:
- 2011-2015 Genome Research Ltd.
- 2010-2012 Broad Institute
+ 2011-2015 Genome Research Ltd.
+ 2010-2012 Broad Institute
License: MIT or GPL-3.0
Comment:
- Dual-licensing is in effect for the default compilation mode.
- When linked with the GPL-licensed GNU Scientific Library
- (as is done for this Debian package), the
- resulting program must be distributed under the GPL.
- .
- The source distribution simply states "GPL-licensed" without indicating
- a version of the GPL, but includes a copy of GPL-3.
+ Dual-licensing is in effect for the default compilation mode.
+ When linked with the GPL-licensed GNU Scientific Library
+ (as is done for this Debian package), the
+ resulting program must be distributed under the GPL.
+ .
+ The source distribution simply states "GPL-licensed" without indicating
+ a version of the GPL, but includes a copy of GPL-3.
Files: kmin.*
Copyright: 2008,2010 Attractive Chaos <attractor at live.co.uk>
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/samtools/bcftools/issues
+Bug-Submit: https://github.com/samtools/bcftools/issues/new
Reference:
- Author: Petr Danecek and Shane A. McCarthy
Title: >
@@ -15,3 +17,5 @@ Registry:
Entry: bcftools
- Name: conda:bioconda
Entry: bcftools
+Repository: https://github.com/samtools/bcftools.git
+Repository-Browse: https://github.com/samtools/bcftools
View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/compare/2448bb187e8c4e5809ddc06b85c3b5c33bededea...460295209687734c243be802d3052b31241f3896
--
View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/compare/2448bb187e8c4e5809ddc06b85c3b5c33bededea...460295209687734c243be802d3052b31241f3896
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