[med-svn] [Git][med-team/quicktree][master] Libsonlib and signalalign need more care first before we go this hackish route

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / quicktree


Commits:
a3fc7a1c by Andreas Tille at 2020-06-17T12:21:33+02:00
Libsonlib and signalalign need more care first before we go this hackish route

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -2,6 +2,8 @@ quicktree (2.5-3) UNRELEASED; urgency=medium
 
   * To enable removing quicktree source code copy from libsonlib package
     a static library is created here
+  FIXME: The above is deactivated.  Libsonlib and signalalign need more
+         care first before we go this hackish route
 
  -- Andreas Tille <tille at debian.org>  Tue, 16 Jun 2020 09:35:08 +0200
 


=====================================
debian/control
=====================================
@@ -31,25 +31,26 @@ Description: Neighbor-Joining algorithm for phylogenies
  The tress are written to stdout, in the Newick/New-Hampshire format
  use by PHYLIP and many other programs
 
-Package: libquicktree-dev
-Architecture: any
-Section: libdevel
-Depends: ${shlibs:Depends},
-         ${misc:Depends}
-Description: Neighbor-Joining algorithm for phylogenies (development)
- QuickTree is an efficient implementation of the Neighbor-Joining
- algorithm (PMID: 3447015), capable of reconstructing phylogenies from
- huge alignments in time less than the age of the universe.
- .
- QuickTree accepts both distance matrix and multiple-sequence-aligment
- inputs. The former should be in PHYLIP format. The latter should be
- in Stockholm format, which is the native alignment format for the Pfam
- database. Alignments in various formats can be converted to Stockholm
- format with the sreformat program, which is part of the HMMer package
- (hmmer.org).
- .
- The tress are written to stdout, in the Newick/New-Hampshire format
- use by PHYLIP and many other programs
- .
- This package contains some header files from quicktree that are used
- by other packages.
+#FIXME: This is needed for libsonlib as predependency of signalalign - but things need to be clarified first
+#Package: libquicktree-dev
+#Architecture: any
+#Section: libdevel
+#Depends: ${shlibs:Depends},
+#         ${misc:Depends}
+#Description: Neighbor-Joining algorithm for phylogenies (development)
+# QuickTree is an efficient implementation of the Neighbor-Joining
+# algorithm (PMID: 3447015), capable of reconstructing phylogenies from
+# huge alignments in time less than the age of the universe.
+# .
+# QuickTree accepts both distance matrix and multiple-sequence-aligment
+# inputs. The former should be in PHYLIP format. The latter should be
+# in Stockholm format, which is the native alignment format for the Pfam
+# database. Alignments in various formats can be converted to Stockholm
+# format with the sreformat program, which is part of the HMMer package
+# (hmmer.org).
+# .
+# The tress are written to stdout, in the Newick/New-Hampshire format
+# use by PHYLIP and many other programs
+# .
+# This package contains some header files from quicktree that are used
+# by other packages.



View it on GitLab: https://salsa.debian.org/med-team/quicktree/-/commit/a3fc7a1c9133243d494b7485d4e01e4bcbb1045a

-- 
View it on GitLab: https://salsa.debian.org/med-team/quicktree/-/commit/a3fc7a1c9133243d494b7485d4e01e4bcbb1045a
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