[med-svn] [Git][med-team/t-coffee][master] 2 commits: added patch to increase MAX_N_PID to 4194304

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / t-coffee


Commits:
77b14fb5 by Etienne Mollier at 2020-06-17T20:10:30+02:00
added patch to increase MAX_N_PID to 4194304

- - - - -
899e3cb4 by Etienne Mollier at 2020-06-17T20:13:26+02:00
updated homepage

The former homepage points to a deprecated redirection leading to
the newer one; an update of the URL was welcome perhaps.

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/increase_max_pid.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+t-coffee (13.41.0.28bdc39+dfsg-4) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Increase MAX_N_PID to 4194304. (Closes: #962974)
+  * Updated the homepage, following permanent redirection.
+
+ -- Etienne Mollier <etienne.mollier at mailoo.org>  Wed, 17 Jun 2020 19:22:31 +0200
+
 t-coffee (13.41.0.28bdc39+dfsg-3) unstable; urgency=medium
 
   [ Aaron M. Ucko ]


=====================================
debian/control
=====================================
@@ -8,7 +8,7 @@ Build-Depends: debhelper-compat (= 12)
 Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/t-coffee
 Vcs-Git: https://salsa.debian.org/med-team/t-coffee.git
-Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
+Homepage: http://www.tcoffee.org/Projects/tcoffee/index.html
 Rules-Requires-Root: no
 
 Package: t-coffee


=====================================
debian/patches/increase_max_pid.patch
=====================================
@@ -0,0 +1,23 @@
+Description: increase MAX_N_PID to Linux 64 bits theoretical maximum
+ Since Debian Bullseye, the system now has a default pid_max of 4194304 instead
+ of the historical 32768.  This renders t-coffee much more likely to crash on
+ compute nodes always powered on in computer centers.  This patch addresses
+ that issue with a value set to the theoretical upper limit of Linux on 64 bits
+ systems.
+Author: Étienne Mollier <etienne.mollier at mailoo.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962974
+Forwarded: no
+Last-Update: 2020-06-17
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- t-coffee.orig/t_coffee_source/coffee_defines.h
++++ t-coffee/t_coffee_source/coffee_defines.h
+@@ -40,7 +40,7 @@
+ #define TMP_MAX_KEEP  10
+ #define CACHE_MAX_SIZE  2000
+ #define CACHE_MAX_KEEP  180
+-#define MAX_N_PID       260000
++#define MAX_N_PID       4194304
+ //Importnat Values Affecting the Program Behavior
+ #define O2A_BYTE         50
+ #define SCORE_K          10


=====================================
debian/patches/series
=====================================
@@ -8,3 +8,4 @@ mayhem.patch
 stable-linking-inputs.patch
 clustalw2.patch
 verbose_build
+increase_max_pid.patch



View it on GitLab: https://salsa.debian.org/med-team/t-coffee/-/compare/39db5055efdce635a4ddbf74e34b4376306c0a71...899e3cb4779e81f0bfe673b4dfb581d3bf9cc742

-- 
View it on GitLab: https://salsa.debian.org/med-team/t-coffee/-/compare/39db5055efdce635a4ddbf74e34b4376306c0a71...899e3cb4779e81f0bfe673b4dfb581d3bf9cc742
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