[med-svn] [Git][med-team/pychopper][master] Fixing lintian warning, cowbuilder feedback

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / pychopper


Commits:
40f7907f by Steffen Möller at 2020-06-18T15:08:21+02:00
Fixing lintian warning, cowbuilder feedback

- - - - -


2 changed files:

- debian/control
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -6,6 +6,9 @@ Uploaders: Steffen Moeller <moeller at debian.org>
 Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3-setuptools,
+	       python3-sphinx,
+	       python3-sphinx-argparse,
+	       python3-sphinx-rtd-theme,
                python3-all,
                python3-edlib <!nocheck>,
                python3-parasail <!nocheck>,
@@ -15,9 +18,17 @@ Build-Depends: debhelper-compat (= 13),
                python3-six <!nocheck>,
                python3-pandas <!nocheck>,
                python3-pytest <!nocheck>,
-               python3-sphinx <!nocheck>,
-               python3-sphinx-rtd-theme <!nocheck>,
-               python3-hypothesis <!nocheck>
+               python3-pytest-arraydiff <!nocheck>,
+               python3-pytest-cov <!nocheck>,
+               python3-pytest-doctestplus <!nocheck>,
+               python3-pytest-forked <!nocheck>,
+               python3-pytest-openfiles <!nocheck>,
+               python3-pytest-remotedata <!nocheck>,
+               python3-pytest-timeout <!nocheck>,
+               python3-pytest-xdist <!nocheck>,
+               python3-hypothesis <!nocheck>,
+               python3-pytest-mock <!nocheck>,
+               xonsh <!nocheck>
 Standards-Version: 4.5.0
 Homepage: https://github.com/nanoporetech/pychopper
 Vcs-Browser: https://salsa.debian.org/med-team/pychopper
@@ -29,9 +40,10 @@ Package: python3-pychopper
 Architecture: all
 Depends: ${python3:Depends}, ${misc:Depends}
 Description: identify, orient and trim full-length Nanopore cDNA reads
- Pychopper v2 is a python module to identify, orient and trim full-length Nanopore
- cDNA reads. It is also able to rescue fused reads and provides the script
- 'cdna_classifier.py'.  The general approach of Pychopper v2 is the following:
+ Pychopper v2 is a python module to identify, orient and trim full-length
+ Nanopore cDNA reads. It is also able to rescue fused reads and provides
+ the script 'cdna_classifier.py'.  The general approach of Pychopper v2
+ is the following:
  .
   * Pychopper first identifies alignment hits of the primers across the
     length of the sequence. The default method for doing this is using


=====================================
debian/rules
=====================================
@@ -9,7 +9,7 @@ export PYBUILD_NAME=pychopper
 
 override_dh_auto_build:
 	dh_auto_build
-	cd docs && make man
+	cd docs && PYTHONPATH=.. make man
 
 override_dh_auto_install:
 	dh_auto_install



View it on GitLab: https://salsa.debian.org/med-team/pychopper/-/commit/40f7907fcb23fb62312f3641843c17329a99c750

-- 
View it on GitLab: https://salsa.debian.org/med-team/pychopper/-/commit/40f7907fcb23fb62312f3641843c17329a99c750
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