[med-svn] [Git][med-team/samtools][master] 7 commits: routine-update: Standards-Version: 4.5.0

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / samtools


Commits:
0e522cb4 by Andreas Tille at 2020-06-19T11:41:02+02:00
routine-update: Standards-Version: 4.5.0

- - - - -
58200bd8 by Andreas Tille at 2020-06-19T11:41:02+02:00
routine-update: debhelper-compat 13

- - - - -
55bc2fb6 by Andreas Tille at 2020-06-19T11:41:20+02:00
routine-update: Add salsa-ci file

- - - - -
ed0a6251 by Andreas Tille at 2020-06-19T11:41:20+02:00
routine-update: Rules-Requires-Root: no

- - - - -
2077b332 by Andreas Tille at 2020-06-19T11:41:39+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository.

Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html

- - - - -
a0e76b08 by Andreas Tille at 2020-06-19T11:41:40+02:00
Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.

Fixes: lintian: uses-deprecated-adttmp
See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html

- - - - -
ae79f578 by Andreas Tille at 2020-06-19T11:50:04+02:00
routine-update: Ready to upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/salsa-ci.yml
- debian/tests/samtools-test
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,10 +1,14 @@
-samtools (1.10-4) UNRELEASED; urgency=medium
+samtools (1.10-4) unstable; urgency=medium
 
   * cwltools only "Suggests" not "Recommends"
   * There are no Python scripts provided in samtools any more
     Closes: #963093
+  * Standards-Version: 4.5.0 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
 
- -- Andreas Tille <tille at debian.org>  Tue, 09 Jun 2020 11:27:33 +0200
+ -- Andreas Tille <tille at debian.org>  Fri, 19 Jun 2020 11:41:40 +0200
 
 samtools (1.10-3) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -4,7 +4,7 @@ Uploaders: Charles Plessy <plessy at debian.org>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                bash-completion,
                libio-pty-perl <!nocheck>,
                libncurses5-dev,
@@ -17,10 +17,11 @@ Build-Depends: debhelper-compat (= 12),
                liblzma-dev,
                libbz2-dev
 # tabix is needed for the regression tests.
-Standards-Version: 4.4.1
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/samtools
 Vcs-Git: https://salsa.debian.org/med-team/samtools.git
 Homepage: http://www.htslib.org/
+Rules-Requires-Root: no
 
 Package: samtools
 Architecture: any


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/tests/samtools-test
=====================================
@@ -1,6 +1,6 @@
 #!/bin/sh -e
 
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
 cp -a /usr/share/samtools/test/ .
 ln -s /usr/bin/samtools .
 ./test/test.pl


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/samtools/samtools/issues
+Bug-Submit: https://github.com/samtools/samtools/issues/new
 Changelog: https://raw.github.com/samtools/samtools/HEAD/NEWS
 Reference:
   author: >
@@ -14,7 +16,7 @@ Reference:
   year: 2009
   URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp352v1
   eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/btp352v1.pdf
-Repository: https://github.com/samtools/samtools
+Repository: https://github.com/samtools/samtools.git
 Registry:
 - Name: bio.tools
   Entry: samtools



View it on GitLab: https://salsa.debian.org/med-team/samtools/-/compare/95afd029b41fe8420f620c4d4a36dc3bf49a0928...ae79f5788c56a890c8582c099b0227e1028e2a9c

-- 
View it on GitLab: https://salsa.debian.org/med-team/samtools/-/compare/95afd029b41fe8420f620c4d4a36dc3bf49a0928...ae79f5788c56a890c8582c099b0227e1028e2a9c
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