Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
9c11e59c by Andreas Tille at 2020-06-19T13:43:06+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,38 +1,38 @@
-Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
+Last-Update: Fri, 19 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {imaging,covid-19} |
- orthanc | 91 | {practice,covid-19,imaging} |
- gdcm | 46 | {imaging-dev} |
- orthanc-wsi | 38 | {laboratory,his,practice,imaging,covid-19,oncology} |
- htsjdk | 34 | {bio-dev} |
- dcm2niix | 25 | {imaging} |
- dicom3tools | 24 | {imaging} |
- dicomscope | 23 | {imaging} |
- gdcm | 19 | {covid-19,imaging} |
- ngs-sdk | 19 | {bio-dev} |
+ dcmtk | 186 | {imaging,covid-19} |
+ orthanc | 92 | {practice,covid-19,imaging} |
+ gdcm | 50 | {imaging-dev} |
+ orthanc-wsi | 40 | {laboratory,his,practice,imaging,covid-19,oncology} |
+ htsjdk | 35 | {bio-dev} |
+ dicomscope | 25 | {imaging} |
+ dcm2niix | 24 | {imaging} |
+ dicom3tools | 23 | {imaging} |
+ gdcm | 20 | {covid-19,imaging} |
gnumed-server | 18 | {covid-19,practice} |
- gdcm | 13 | {imaging-dev} |
+ ngs-sdk | 18 | {bio-dev} |
insighttoolkit4 | 13 | {imaging-dev} |
+ gdcm | 12 | {imaging-dev} |
invesalius | 12 | {imaging} |
minc-tools | 12 | {imaging} |
- adun.app | 11 | {bio} |
- plastimatch | 11 | {imaging} |
+ adun.app | 10 | {bio} |
jebl2 | 10 | {bio-dev} |
- king | 10 | {imaging,typesetting} |
+ pixelmed | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
+ vtk-dicom | 10 | {imaging} |
biosig4c++ | 9 | {imaging,physics} |
+ king | 9 | {imaging,typesetting} |
librg-utils-perl | 9 | {bio} |
- openslide | 9 | {imaging} |
- pixelmed | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
+ psychopy | 9 | {psychology} |
+ dicompyler | 8 | {oncology} |
melting | 8 | {cloud,bio} |
- ngs-sdk | 8 | {bio-dev} |
- psychopy | 8 | {psychology} |
+ openslide | 8 | {imaging} |
biojava-live | 7 | {bio-dev} |
- dicompyler | 7 | {oncology} |
fastlink | 7 | {bio,cloud} |
ncbi-seg | 7 | {bio} |
+ ngs-sdk | 7 | {bio-dev} |
orthanc-webviewer | 7 | {imaging} |
sibsim4 | 7 | {cloud,bio} |
vsearch | 7 | {bio,covid-19} |
@@ -44,7 +44,6 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
pymia | 6 | {imaging-dev} |
seqsero | 6 | {bio} |
sigma-align | 6 | {cloud,bio,bio-phylogeny} |
- snap-aligner | 6 | {bio} |
spread-phy | 6 | {bio-phylogeny,bio} |
staden | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
@@ -52,31 +51,30 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
brig | 5 | {bio} |
ea-utils | 5 | {bio} |
ecopcr | 5 | {bio} |
- elastix | 5 | {imaging} |
jaligner | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
+ libminc | 5 | {imaging-dev} |
maqview | 5 | {bio} |
mipe | 5 | {bio,cloud} |
neobio | 5 | {cloud,bio} |
- nutsqlite | 5 | {tools} |
- orthanc-mysql | 5 | {imaging} |
predictprotein | 5 | {bio} |
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
runcircos-gui | 5 | {bio} |
sickle | 5 | {bio} |
+ snap-aligner | 5 | {bio} |
squizz | 5 | {cloud,bio} |
alter-sequence-alignment | 4 | {bio} |
ampliconnoise | 4 | {bio,cloud} |
anfo | 4 | {cloud,bio} |
arden | 4 | {cloud,bio} |
- bandage | 4 | {bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio,bio-dev} |
delly | 4 | {covid-19,bio} |
edtsurf | 4 | {bio} |
+ elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {bio,cloud} |
embassy-domalign | 4 | {bio,cloud} |
embassy-domsearch | 4 | {cloud,bio} |
@@ -86,7 +84,6 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lagan | 4 | {bio} |
- libminc | 4 | {imaging-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
@@ -94,7 +91,9 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
microbegps | 4 | {bio} |
mlv-smile | 4 | {cloud,bio} |
mrs | 4 | {bio} |
+ nutsqlite | 4 | {tools} |
openslide | 4 | {imaging-dev} |
+ orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
@@ -117,6 +116,7 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
transtermhp | 4 | {bio} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
+ bandage | 3 | {bio} |
beads | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
bio-rainbow | 3 | {bio} |
@@ -149,7 +149,6 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
phast | 3 | {bio} |
phipack | 3 | {bio} |
phybin | 3 | {bio} |
- pilon | 3 | {bio} |
plasmidseeker | 3 | {bio} |
prime-phylo | 3 | {bio,cloud} |
prottest | 3 | {bio,bio-phylogeny} |
@@ -181,7 +180,6 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
embassy-phylip | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
libsbml | 2 | {bio-dev} |
- ngs-sdk | 2 | {bio-dev} |
oscar | 2 | {data,practice,tools} |
pal2nal | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
@@ -198,8 +196,8 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
murasaki | 1 | {bio} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- parallel-fastq-dump | 1 | {covid-19} |
python-scitrack | 1 | {covid-19} |
q2templates | 1 | {bio} |
relion | 1 | {bio} |
@@ -217,11 +215,9 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
- drop-seq | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
- ivar | 0 | {covid-19} |
kma | 0 | {bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
@@ -256,9 +252,11 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
multiqc | 0 | {covid-19,bio} |
+ nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
+ parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
@@ -282,7 +280,7 @@ Last-Update: Fri, 19 Jun 2020 01:42:03 +0000
varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {bio,covid-19} |
- flash | -1 | {covid-19,bio} |
pycoqc | -1 | {bio,covid-19} |
-(311 rows)
+ tiddit | -1 | {covid-19,bio} |
+(309 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9c11e59c0d91f2f9fbc8440c32a5032c3b5f264f
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9c11e59c0d91f2f9fbc8440c32a5032c3b5f264f
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