Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b4adec04 by Andreas Tille at 2020-06-20T13:42:58+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,40 @@
-Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
+Last-Update: Sat, 20 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 186 | {imaging,covid-19} |
- orthanc | 92 | {practice,covid-19,imaging} |
- gdcm | 50 | {imaging-dev} |
- orthanc-wsi | 40 | {laboratory,his,practice,imaging,covid-19,oncology} |
- htsjdk | 35 | {bio-dev} |
- dicomscope | 25 | {imaging} |
- dcm2niix | 24 | {imaging} |
+ orthanc | 92 | {covid-19,practice,imaging} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 40 | {covid-19,imaging,laboratory,oncology,practice,his} |
+ htsjdk | 33 | {bio-dev} |
+ dcm2niix | 25 | {imaging} |
+ dicomscope | 24 | {imaging} |
dicom3tools | 23 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
+ gdcm | 21 | {covid-19,imaging} |
gnumed-server | 18 | {covid-19,practice} |
ngs-sdk | 18 | {bio-dev} |
- insighttoolkit4 | 13 | {imaging-dev} |
gdcm | 12 | {imaging-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
invesalius | 12 | {imaging} |
minc-tools | 12 | {imaging} |
- adun.app | 10 | {bio} |
+ adun.app | 11 | {bio} |
jebl2 | 10 | {bio-dev} |
pixelmed | 10 | {imaging} |
plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
- biosig4c++ | 9 | {imaging,physics} |
- king | 9 | {imaging,typesetting} |
- librg-utils-perl | 9 | {bio} |
+ biosig4c++ | 9 | {physics,imaging} |
+ king | 9 | {typesetting,imaging} |
psychopy | 9 | {psychology} |
+ vsearch | 9 | {covid-19,bio} |
dicompyler | 8 | {oncology} |
+ librg-utils-perl | 8 | {bio} |
melting | 8 | {cloud,bio} |
openslide | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
- fastlink | 7 | {bio,cloud} |
+ fastlink | 7 | {cloud,bio} |
ncbi-seg | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
orthanc-webviewer | 7 | {imaging} |
- sibsim4 | 7 | {cloud,bio} |
- vsearch | 7 | {bio,covid-19} |
+ biojava-live | 6 | {bio-dev} |
king-probe | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
@@ -43,16 +42,16 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
piler | 6 | {bio} |
pymia | 6 | {imaging-dev} |
seqsero | 6 | {bio} |
- sigma-align | 6 | {cloud,bio,bio-phylogeny} |
- spread-phy | 6 | {bio-phylogeny,bio} |
+ sibsim4 | 6 | {bio,cloud} |
+ sigma-align | 6 | {cloud,bio-phylogeny,bio} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
staden | 6 | {bio} |
- treeview | 6 | {bio-phylogeny,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
brig | 5 | {bio} |
ea-utils | 5 | {bio} |
ecopcr | 5 | {bio} |
jaligner | 5 | {bio} |
- libdivsufsort | 5 | {bio-dev} |
libminc | 5 | {imaging-dev} |
maqview | 5 | {bio} |
mipe | 5 | {bio,cloud} |
@@ -61,33 +60,33 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
runcircos-gui | 5 | {bio} |
- sickle | 5 | {bio} |
snap-aligner | 5 | {bio} |
- squizz | 5 | {cloud,bio} |
+ squizz | 5 | {bio,cloud} |
+ stacks | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
ampliconnoise | 4 | {bio,cloud} |
- anfo | 4 | {cloud,bio} |
- arden | 4 | {cloud,bio} |
+ anfo | 4 | {bio,cloud} |
+ arden | 4 | {bio,cloud} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
biomaj3-daemon | 4 | {bio} |
- bio-tradis | 4 | {bio,bio-dev} |
delly | 4 | {covid-19,bio} |
edtsurf | 4 | {bio} |
elastix | 4 | {imaging} |
- embassy-domainatrix | 4 | {bio,cloud} |
+ embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {bio,cloud} |
- embassy-domsearch | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lagan | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio-ngs,bio} |
+ mhap | 4 | {bio,bio-ngs} |
microbegps | 4 | {bio} |
mlv-smile | 4 | {cloud,bio} |
mrs | 4 | {bio} |
@@ -99,19 +98,18 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
perm | 4 | {cloud,bio} |
placnet | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
- probabel | 4 | {cloud,bio} |
+ probabel | 4 | {bio,cloud} |
pscan-tfbs | 4 | {bio} |
qrisk2 | 4 | {practice} |
- radiant | 4 | {bio} |
rambo-k | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
+ rtax | 4 | {bio,cloud} |
saint | 4 | {bio} |
salmon | 4 | {covid-19,bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
- stacks | 4 | {bio} |
- tnseq-transit | 4 | {covid-19,bio} |
+ sickle | 4 | {bio} |
+ tnseq-transit | 4 | {bio,covid-19} |
tracetuner | 4 | {bio} |
transtermhp | 4 | {bio} |
assemblytics | 3 | {bio} |
@@ -120,10 +118,11 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
beads | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
bio-rainbow | 3 | {bio} |
+ bio-tradis | 3 | {bio-dev,bio} |
bitseq | 3 | {bio} |
canu | 3 | {bio} |
centrifuge | 3 | {covid-19,bio} |
- clonalframeml | 3 | {covid-19,bio} |
+ clonalframeml | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
daligner | 3 | {bio,bio-ngs} |
dascrubber | 3 | {bio} |
@@ -136,7 +135,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
fsm-lite | 3 | {bio} |
harvest-tools | 3 | {bio} |
hinge | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
lamarc | 3 | {bio} |
libncl | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
@@ -144,7 +143,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
metaphlan2 | 3 | {bio} |
mptp | 3 | {bio} |
murasaki | 3 | {bio} |
- nanook | 3 | {covid-19,bio} |
+ nanook | 3 | {bio,covid-19} |
patman | 3 | {bio} |
phast | 3 | {bio} |
phipack | 3 | {bio} |
@@ -155,11 +154,12 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
quorum | 3 | {bio} |
+ radiant | 3 | {bio} |
rampler | 3 | {bio} |
relion | 3 | {bio} |
repeatmasker-recon | 3 | {bio} |
roguenarok | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
+ samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
seqmagick | 3 | {covid-19,bio} |
soapaligner | 3 | {bio} |
@@ -170,9 +170,8 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
surankco | 3 | {bio} |
sweed | 3 | {bio} |
tvc | 3 | {bio} |
- velvetoptimiser | 3 | {bio} |
yaha | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
+ zalign | 3 | {cloud,bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
@@ -180,17 +179,17 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
embassy-phylip | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
libsbml | 2 | {bio-dev} |
- oscar | 2 | {data,practice,tools} |
+ oscar | 2 | {tools,practice,data} |
pal2nal | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
relion | 2 | {bio} |
sift | 2 | {bio} |
trace2dbest | 2 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
+ velvetoptimiser | 2 | {bio} |
+ cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
gatb-core | 1 | {bio-dev} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmialm | 1 | {imaging-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -207,21 +206,22 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
wtdbg2 | 1 | {covid-19} |
acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
- augur | 0 | {covid-19,bio} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
+ cufflinks | 0 | {bio,cloud} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
kma | 0 | {bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
+ libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
libbpp-phyl | 0 | {bio-dev} |
@@ -237,7 +237,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -249,9 +249,9 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {covid-19,bio} |
+ multiqc | 0 | {bio,covid-19} |
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
@@ -262,8 +262,8 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
pilercr | 0 | {bio} |
python-py2bit | 0 | {bio,bio-dev} |
quicktree | 0 | {covid-19,bio-phylogeny,bio} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
@@ -273,7 +273,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
- stringtie | 0 | {bio,covid-19} |
+ stringtie | 0 | {covid-19,bio} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
@@ -281,6 +281,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {bio,covid-19} |
pycoqc | -1 | {bio,covid-19} |
+ shovill | -1 | {bio,covid-19} |
tiddit | -1 | {covid-19,bio} |
-(309 rows)
+(310 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b4adec041ad48b41d081f2d9084cc53dd1b66eeb
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b4adec041ad48b41d081f2d9084cc53dd1b66eeb
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