[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Sat Jun 20 14:43:03 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
b4adec04 by Andreas Tille at 2020-06-20T13:42:58+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,40 @@
-Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
+Last-Update: Sat, 20 Jun 2020 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
  dcmtk                         |    186 | {imaging,covid-19}                                  | 
- orthanc                       |     92 | {practice,covid-19,imaging}                         | 
- gdcm                          |     50 | {imaging-dev}                                       | 
- orthanc-wsi                   |     40 | {laboratory,his,practice,imaging,covid-19,oncology} | 
- htsjdk                        |     35 | {bio-dev}                                           | 
- dicomscope                    |     25 | {imaging}                                           | 
- dcm2niix                      |     24 | {imaging}                                           | 
+ orthanc                       |     92 | {covid-19,practice,imaging}                         | 
+ gdcm                          |     46 | {imaging-dev}                                       | 
+ orthanc-wsi                   |     40 | {covid-19,imaging,laboratory,oncology,practice,his} | 
+ htsjdk                        |     33 | {bio-dev}                                           | 
+ dcm2niix                      |     25 | {imaging}                                           | 
+ dicomscope                    |     24 | {imaging}                                           | 
  dicom3tools                   |     23 | {imaging}                                           | 
- gdcm                          |     20 | {covid-19,imaging}                                  | 
+ gdcm                          |     21 | {covid-19,imaging}                                  | 
  gnumed-server                 |     18 | {covid-19,practice}                                 | 
  ngs-sdk                       |     18 | {bio-dev}                                           | 
- insighttoolkit4               |     13 | {imaging-dev}                                       | 
  gdcm                          |     12 | {imaging-dev}                                       | 
+ insighttoolkit4               |     12 | {imaging-dev}                                       | 
  invesalius                    |     12 | {imaging}                                           | 
  minc-tools                    |     12 | {imaging}                                           | 
- adun.app                      |     10 | {bio}                                               | 
+ adun.app                      |     11 | {bio}                                               | 
  jebl2                         |     10 | {bio-dev}                                           | 
  pixelmed                      |     10 | {imaging}                                           | 
  plastimatch                   |     10 | {imaging}                                           | 
  vtk-dicom                     |     10 | {imaging}                                           | 
- biosig4c++                    |      9 | {imaging,physics}                                   | 
- king                          |      9 | {imaging,typesetting}                               | 
- librg-utils-perl              |      9 | {bio}                                               | 
+ biosig4c++                    |      9 | {physics,imaging}                                   | 
+ king                          |      9 | {typesetting,imaging}                               | 
  psychopy                      |      9 | {psychology}                                        | 
+ vsearch                       |      9 | {covid-19,bio}                                      | 
  dicompyler                    |      8 | {oncology}                                          | 
+ librg-utils-perl              |      8 | {bio}                                               | 
  melting                       |      8 | {cloud,bio}                                         | 
  openslide                     |      8 | {imaging}                                           | 
- biojava-live                  |      7 | {bio-dev}                                           | 
- fastlink                      |      7 | {bio,cloud}                                         | 
+ fastlink                      |      7 | {cloud,bio}                                         | 
  ncbi-seg                      |      7 | {bio}                                               | 
  ngs-sdk                       |      7 | {bio-dev}                                           | 
  orthanc-webviewer             |      7 | {imaging}                                           | 
- sibsim4                       |      7 | {cloud,bio}                                         | 
- vsearch                       |      7 | {bio,covid-19}                                      | 
+ biojava-live                  |      6 | {bio-dev}                                           | 
  king-probe                    |      6 | {bio}                                               | 
  obitools                      |      6 | {bio}                                               | 
  orthanc-dicomweb              |      6 | {covid-19,imaging}                                  | 
@@ -43,16 +42,16 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  piler                         |      6 | {bio}                                               | 
  pymia                         |      6 | {imaging-dev}                                       | 
  seqsero                       |      6 | {bio}                                               | 
- sigma-align                   |      6 | {cloud,bio,bio-phylogeny}                           | 
- spread-phy                    |      6 | {bio-phylogeny,bio}                                 | 
+ sibsim4                       |      6 | {bio,cloud}                                         | 
+ sigma-align                   |      6 | {cloud,bio-phylogeny,bio}                           | 
+ spread-phy                    |      6 | {bio,bio-phylogeny}                                 | 
  staden                        |      6 | {bio}                                               | 
- treeview                      |      6 | {bio-phylogeny,bio}                                 | 
+ treeview                      |      6 | {bio,bio-phylogeny}                                 | 
  biomaj3-cli                   |      5 | {cloud}                                             | 
  brig                          |      5 | {bio}                                               | 
  ea-utils                      |      5 | {bio}                                               | 
  ecopcr                        |      5 | {bio}                                               | 
  jaligner                      |      5 | {bio}                                               | 
- libdivsufsort                 |      5 | {bio-dev}                                           | 
  libminc                       |      5 | {imaging-dev}                                       | 
  maqview                       |      5 | {bio}                                               | 
  mipe                          |      5 | {bio,cloud}                                         | 
@@ -61,33 +60,33 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  rdp-alignment                 |      5 | {bio}                                               | 
  rdp-readseq                   |      5 | {bio}                                               | 
  runcircos-gui                 |      5 | {bio}                                               | 
- sickle                        |      5 | {bio}                                               | 
  snap-aligner                  |      5 | {bio}                                               | 
- squizz                        |      5 | {cloud,bio}                                         | 
+ squizz                        |      5 | {bio,cloud}                                         | 
+ stacks                        |      5 | {bio}                                               | 
  alter-sequence-alignment      |      4 | {bio}                                               | 
  ampliconnoise                 |      4 | {bio,cloud}                                         | 
- anfo                          |      4 | {cloud,bio}                                         | 
- arden                         |      4 | {cloud,bio}                                         | 
+ anfo                          |      4 | {bio,cloud}                                         | 
+ arden                         |      4 | {bio,cloud}                                         | 
  bart-view                     |      4 | {imaging}                                           | 
  beast-mcmc                    |      4 | {bio-phylogeny,bio}                                 | 
  biomaj3-daemon                |      4 | {bio}                                               | 
- bio-tradis                    |      4 | {bio,bio-dev}                                       | 
  delly                         |      4 | {covid-19,bio}                                      | 
  edtsurf                       |      4 | {bio}                                               | 
  elastix                       |      4 | {imaging}                                           | 
- embassy-domainatrix           |      4 | {bio,cloud}                                         | 
+ embassy-domainatrix           |      4 | {cloud,bio}                                         | 
  embassy-domalign              |      4 | {bio,cloud}                                         | 
- embassy-domsearch             |      4 | {cloud,bio}                                         | 
+ embassy-domsearch             |      4 | {bio,cloud}                                         | 
  gatb-core                     |      4 | {bio}                                               | 
  getdata                       |      4 | {bio}                                               | 
  ghmm                          |      4 | {bio}                                               | 
  ipig                          |      4 | {bio}                                               | 
  jellyfish1                    |      4 | {bio}                                               | 
  lagan                         |      4 | {bio}                                               | 
+ libdivsufsort                 |      4 | {bio-dev}                                           | 
  librdp-taxonomy-tree-java     |      4 | {bio-dev}                                           | 
  maffilter                     |      4 | {bio}                                               | 
  mauve-aligner                 |      4 | {bio}                                               | 
- mhap                          |      4 | {bio-ngs,bio}                                       | 
+ mhap                          |      4 | {bio,bio-ngs}                                       | 
  microbegps                    |      4 | {bio}                                               | 
  mlv-smile                     |      4 | {cloud,bio}                                         | 
  mrs                           |      4 | {bio}                                               | 
@@ -99,19 +98,18 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  perm                          |      4 | {cloud,bio}                                         | 
  placnet                       |      4 | {bio}                                               | 
  proalign                      |      4 | {bio-phylogeny,bio}                                 | 
- probabel                      |      4 | {cloud,bio}                                         | 
+ probabel                      |      4 | {bio,cloud}                                         | 
  pscan-tfbs                    |      4 | {bio}                                               | 
  qrisk2                        |      4 | {practice}                                          | 
- radiant                       |      4 | {bio}                                               | 
  rambo-k                       |      4 | {bio}                                               | 
  rdp-classifier                |      4 | {bio}                                               | 
- rtax                          |      4 | {cloud,bio}                                         | 
+ rtax                          |      4 | {bio,cloud}                                         | 
  saint                         |      4 | {bio}                                               | 
  salmon                        |      4 | {covid-19,bio}                                      | 
  scythe                        |      4 | {bio}                                               | 
  segemehl                      |      4 | {bio}                                               | 
- stacks                        |      4 | {bio}                                               | 
- tnseq-transit                 |      4 | {covid-19,bio}                                      | 
+ sickle                        |      4 | {bio}                                               | 
+ tnseq-transit                 |      4 | {bio,covid-19}                                      | 
  tracetuner                    |      4 | {bio}                                               | 
  transtermhp                   |      4 | {bio}                                               | 
  assemblytics                  |      3 | {bio}                                               | 
@@ -120,10 +118,11 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  beads                         |      3 | {bio}                                               | 
  beast2-mcmc                   |      3 | {bio}                                               | 
  bio-rainbow                   |      3 | {bio}                                               | 
+ bio-tradis                    |      3 | {bio-dev,bio}                                       | 
  bitseq                        |      3 | {bio}                                               | 
  canu                          |      3 | {bio}                                               | 
  centrifuge                    |      3 | {covid-19,bio}                                      | 
- clonalframeml                 |      3 | {covid-19,bio}                                      | 
+ clonalframeml                 |      3 | {bio,covid-19}                                      | 
  clonalorigin                  |      3 | {bio}                                               | 
  daligner                      |      3 | {bio,bio-ngs}                                       | 
  dascrubber                    |      3 | {bio}                                               | 
@@ -136,7 +135,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  fsm-lite                      |      3 | {bio}                                               | 
  harvest-tools                 |      3 | {bio}                                               | 
  hinge                         |      3 | {bio}                                               | 
- jmodeltest                    |      3 | {bio,bio-phylogeny}                                 | 
+ jmodeltest                    |      3 | {bio-phylogeny,bio}                                 | 
  lamarc                        |      3 | {bio}                                               | 
  libncl                        |      3 | {bio}                                               | 
  libpal-java                   |      3 | {bio-dev}                                           | 
@@ -144,7 +143,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  metaphlan2                    |      3 | {bio}                                               | 
  mptp                          |      3 | {bio}                                               | 
  murasaki                      |      3 | {bio}                                               | 
- nanook                        |      3 | {covid-19,bio}                                      | 
+ nanook                        |      3 | {bio,covid-19}                                      | 
  patman                        |      3 | {bio}                                               | 
  phast                         |      3 | {bio}                                               | 
  phipack                       |      3 | {bio}                                               | 
@@ -155,11 +154,12 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  pscan-chip                    |      3 | {bio}                                               | 
  qcumber                       |      3 | {bio}                                               | 
  quorum                        |      3 | {bio}                                               | 
+ radiant                       |      3 | {bio}                                               | 
  rampler                       |      3 | {bio}                                               | 
  relion                        |      3 | {bio}                                               | 
  repeatmasker-recon            |      3 | {bio}                                               | 
  roguenarok                    |      3 | {bio}                                               | 
- samblaster                    |      3 | {bio,covid-19}                                      | 
+ samblaster                    |      3 | {covid-19,bio}                                      | 
  scrm                          |      3 | {bio}                                               | 
  seqmagick                     |      3 | {covid-19,bio}                                      | 
  soapaligner                   |      3 | {bio}                                               | 
@@ -170,9 +170,8 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  surankco                      |      3 | {bio}                                               | 
  sweed                         |      3 | {bio}                                               | 
  tvc                           |      3 | {bio}                                               | 
- velvetoptimiser               |      3 | {bio}                                               | 
  yaha                          |      3 | {bio}                                               | 
- zalign                        |      3 | {bio,cloud}                                         | 
+ zalign                        |      3 | {cloud,bio}                                         | 
  biosig4c++                    |      2 | {physics,imaging-dev}                               | 
  blasr                         |      2 | {bio-ngs,bio}                                       | 
  blimps                        |      2 | {bio}                                               | 
@@ -180,17 +179,17 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  embassy-phylip                |      2 | {cloud,bio}                                         | 
  emboss-explorer               |      2 | {bio}                                               | 
  libsbml                       |      2 | {bio-dev}                                           | 
- oscar                         |      2 | {data,practice,tools}                               | 
+ oscar                         |      2 | {tools,practice,data}                               | 
  pal2nal                       |      2 | {bio}                                               | 
  papyrus                       |      2 | {imaging-dev}                                       | 
  pbdagcon                      |      2 | {bio}                                               | 
  relion                        |      2 | {bio}                                               | 
  sift                          |      2 | {bio}                                               | 
  trace2dbest                   |      2 | {bio}                                               | 
- cat-bat                       |      1 | {bio,covid-19}                                      | 
+ velvetoptimiser               |      2 | {bio}                                               | 
+ cat-bat                       |      1 | {covid-19,bio}                                      | 
  ctn                           |      1 | {imaging-dev}                                       | 
  gatb-core                     |      1 | {bio-dev}                                           | 
- libbio-mage-utils-perl        |      1 | {bio-dev}                                           | 
  libctapimkt                   |      1 | {practice}                                          | 
  libmialm                      |      1 | {imaging-dev}                                       | 
  libvistaio                    |      1 | {imaging-dev}                                       | 
@@ -207,21 +206,22 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  wtdbg2                        |      1 | {covid-19}                                          | 
  acedb                         |      0 | {bio,cloud}                                         | 
  atropos                       |      0 | {bio}                                               | 
- augur                         |      0 | {covid-19,bio}                                      | 
+ augur                         |      0 | {bio,covid-19}                                      | 
  bambamc                       |      0 | {bio-dev}                                           | 
  bbmap                         |      0 | {covid-19}                                          | 
  biojava4-live                 |      0 | {bio-dev}                                           | 
  biosig4c++                    |      0 | {physics}                                           | 
  biosyntax                     |      0 | {bio}                                               | 
  camp                          |      0 | {imaging-dev}                                       | 
- cufflinks                     |      0 | {cloud,bio}                                         | 
+ cufflinks                     |      0 | {bio,cloud}                                         | 
  emmax                         |      0 | {bio}                                               | 
  fis-gtm                       |      0 | {his}                                               | 
- htscodecs                     |      0 | {covid-19,bio-dev}                                  | 
+ htscodecs                     |      0 | {bio-dev,covid-19}                                  | 
  kma                           |      0 | {bio}                                               | 
  kmerresistance                |      0 | {bio}                                               | 
  libbigwig                     |      0 | {bio-dev}                                           | 
  libbiod                       |      0 | {bio-dev}                                           | 
+ libbio-mage-utils-perl        |      0 | {bio-dev}                                           | 
  libbioparser-dev              |      0 | {bio-dev}                                           | 
  libbpp-core                   |      0 | {bio-dev}                                           | 
  libbpp-phyl                   |      0 | {bio-dev}                                           | 
@@ -237,7 +237,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  libhmsbeagle                  |      0 | {bio-dev}                                           | 
  libics                        |      0 | {imaging-dev,covid-19}                              | 
  libjloda-java                 |      0 | {bio-dev}                                           | 
- libmaus2                      |      0 | {bio-dev,covid-19}                                  | 
+ libmaus2                      |      0 | {covid-19,bio-dev}                                  | 
  libmems                       |      0 | {bio-dev}                                           | 
  libmuscle                     |      0 | {bio-dev}                                           | 
  libncl                        |      0 | {bio-dev}                                           | 
@@ -249,9 +249,9 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  metastudent-data              |      0 | {bio}                                               | 
  metastudent-data-2            |      0 | {bio}                                               | 
  miaviewit                     |      0 | {imaging-dev}                                       | 
- milib                         |      0 | {covid-19,bio-dev}                                  | 
+ milib                         |      0 | {bio-dev,covid-19}                                  | 
  mssstest                      |      0 | {tools}                                             | 
- multiqc                       |      0 | {covid-19,bio}                                      | 
+ multiqc                       |      0 | {bio,covid-19}                                      | 
  nanosv                        |      0 | {covid-19,bio}                                      | 
  ncbi-vdb                      |      0 | {bio-dev}                                           | 
  opencfu                       |      0 | {laboratory}                                        | 
@@ -262,8 +262,8 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  pilercr                       |      0 | {bio}                                               | 
  python-py2bit                 |      0 | {bio,bio-dev}                                       | 
  quicktree                     |      0 | {covid-19,bio-phylogeny,bio}                        | 
- relion                        |      0 | {bio-dev}                                           | 
  relion                        |      0 | {bio}                                               | 
+ relion                        |      0 | {bio-dev}                                           | 
  sambamba                      |      0 | {bio}                                               | 
  samtools-legacy               |      0 | {bio-dev}                                           | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
@@ -273,7 +273,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  smrtanalysis                  |      0 | {bio,covid-19}                                      | 
  spaln                         |      0 | {bio,covid-19}                                      | 
  srf                           |      0 | {bio-dev}                                           | 
- stringtie                     |      0 | {bio,covid-19}                                      | 
+ stringtie                     |      0 | {covid-19,bio}                                      | 
  thesias                       |      0 | {covid-19,bio}                                      | 
  tophat-recondition            |      0 | {bio,covid-19}                                      | 
  varna                         |      0 | {bio}                                               | 
@@ -281,6 +281,7 @@ Last-Update: Sat, 20 Jun 2020 01:42:03 +0000
  vtk-dicom                     |      0 | {imaging-dev}                                       | 
  bustools                      |     -1 | {bio,covid-19}                                      | 
  pycoqc                        |     -1 | {bio,covid-19}                                      | 
+ shovill                       |     -1 | {bio,covid-19}                                      | 
  tiddit                        |     -1 | {covid-19,bio}                                      | 
-(309 rows)
+(310 rows)
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b4adec041ad48b41d081f2d9084cc53dd1b66eeb

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b4adec041ad48b41d081f2d9084cc53dd1b66eeb
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200620/f62de25b/attachment-0001.html>


More information about the debian-med-commit mailing list