[med-svn] [Git][med-team/intake][master] Fix privacy breaches
Shayan Doust
gitlab at salsa.debian.org
Sat Jun 20 18:27:01 BST 2020
Shayan Doust pushed to branch master at Debian Med / intake
Commits:
eebdacc7 by Shayan Doust at 2020-06-20T18:26:26+01:00
Fix privacy breaches
- - - - -
4 changed files:
- debian/control
- + debian/patches/fix_privacy_breach.patch
- debian/patches/fix_tests.patch
- debian/patches/series
Changes:
=====================================
debian/control
=====================================
@@ -25,7 +25,11 @@ Build-Depends: debhelper-compat (= 13),
python3-msgpack-numpy,
python3-sphinx,
python3-sphinx-rtd-theme,
- python3-numpydoc
+ python3-numpydoc,
+ libjs-bootstrap,
+ libjs-html5shiv,
+ libjs-jquery,
+ node-html5shiv
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/intake
Vcs-Git: https://salsa.debian.org/med-team/intake.git
@@ -60,7 +64,10 @@ Package: python3-intake-doc
Architecture: all
Section: doc
Depends: ${sphinxdoc:Depends},
- ${misc:Depends}
+ ${misc:Depends},
+ libjs-bootstrap,
+ libjs-html5shiv,
+ libjs-jquery
Recommends: python3-intake
Description: documentation for the python3-intake package
Intake is a lightweight set of tools for loading and sharing data in
=====================================
debian/patches/fix_privacy_breach.patch
=====================================
@@ -0,0 +1,144 @@
+Description: fix lintian privacy breach errors
+ Some HTMLs have embedded files, so we try to disable as many or use a Debian packaged version of these files.
+Author: Shayan Doust <hello at shayandoust.me>
+Last-Update: 2020-06-20
+---
+--- intake.orig/intake/cli/server/templates/index.html
++++ intake/intake/cli/server/templates/index.html
+@@ -8,13 +8,13 @@
+ <title>Intake Catalog Browser</title>
+
+ <!-- Bootstrap -->
+- <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
++ <link rel="stylesheet" href="/usr/share/javascript/bootstrap/css/bootstrap.min.css" crossorigin="anonymous">
+
+ <!-- HTML5 shim and Respond.js for IE8 support of HTML5 elements and media queries -->
+ <!-- WARNING: Respond.js doesn't work if you view the page via file:// -->
+ <!--[if lt IE 9]>
+- <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
+- <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
++ <script src="/usr/share/javascript/html5shiv/html5shiv.min.js"></script>
++ <script src="/usr/share/javascript/html5shiv/respond.min.js"></script>
+ <![endif]-->
+ </head>
+ <body>
+@@ -44,8 +44,8 @@
+ </div>
+
+ <!-- jQuery (necessary for Bootstrap's JavaScript plugins) -->
+- <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.12.4/jquery.min.js"></script>
++ <script src="/usr/share/javascript/jquery/jquery.min.js"></script>
+ <!-- Include all compiled plugins (below), or include individual files as needed -->
+- <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
++ <script src="/usr/share/javascript/bootstrap/js/bootstrap.min.js" crossorigin="anonymous"></script>
+ </body>
+-</html>
+\ No newline at end of file
++</html>
+--- intake.orig/docs/source/index.rst
++++ intake/docs/source/index.rst
+@@ -49,8 +49,7 @@
+
+ See the executable tutorial:
+
+-.. image:: https://mybinder.org/badge_logo.svg
+- :target: https://mybinder.org/v2/gh/intake/intake-examples/master?filepath=tutorial%2Fdata_scientist.ipynb
++https://mybinder.org/v2/gh/intake/intake-examples/master?filepath=tutorial%2Fdata_scientist.ipynb
+
+ :term:`Data Provider`
+ ---------------------
+@@ -68,8 +67,7 @@
+
+ See the executable tutorial:
+
+-.. image:: https://mybinder.org/badge_logo.svg
+- :target: https://mybinder.org/v2/gh/intake/intake-examples/master?filepath=tutorial%2Fdata_engineer.ipynb
++https://mybinder.org/v2/gh/intake/intake-examples/master?filepath=tutorial%2Fdata_engineer.ipynb
+
+ :term:`IT`
+ ----------
+@@ -103,8 +101,7 @@
+
+ See the executable tutorial:
+
+-.. image:: https://mybinder.org/badge_logo.svg
+- :target: https://mybinder.org/v2/gh/intake/intake-examples/master?filepath=tutorial%2Fdev.ipynb
++https://mybinder.org/v2/gh/intake/intake-examples/master?filepath=tutorial%2Fdev.ipynb
+
+ First steps
+ ===========
+--- intake.orig/docs/source/_static/images/plotting_example.html
++++ intake/docs/source/_static/images/plotting_example.html
+@@ -1,60 +1 @@
+
+-<!DOCTYPE html>
+-<html lang="en">
+- <head>
+- <meta charset="utf-8">
+- <title>HoloPlot Plot</title>
+-
+-<link rel="stylesheet" href="https://cdn.pydata.org/bokeh/release/bokeh-0.12.16.min.css" type="text/css" />
+-
+-<script type="text/javascript" src="https://cdn.pydata.org/bokeh/release/bokeh-0.12.16.min.js"></script>
+-<script type="text/javascript">
+- Bokeh.set_log_level("info");
+-</script>
+- </head>
+- <body>
+-
+- <div class="bk-root">
+- <div class="bk-plotdiv" id="a54b0d41-2dbd-4cbd-abe8-b158862abe73"></div>
+- </div>
+-
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+- </script>
+- <script type="text/javascript">
+- (function() {
+- var fn = function() {
+- Bokeh.safely(function() {
+- (function(root) {
+- function embed_document(root) {
+-
+- var docs_json = document.getElementById('de6014ac-0cb8-4cb5-aff2-696c243a0f51').textContent;
+- var render_items = [{"docid":"cf966cb6-e460-4e42-870e-e1fe77bb6636","elementid":"a54b0d41-2dbd-4cbd-abe8-b158862abe73","modelid":"9268281a-2417-46c5-9182-d5ebb5689dc2"}];
+- root.Bokeh.embed.embed_items(docs_json, render_items);
+-
+- }
+- if (root.Bokeh !== undefined) {
+- embed_document(root);
+- } else {
+- var attempts = 0;
+- var timer = setInterval(function(root) {
+- if (root.Bokeh !== undefined) {
+- embed_document(root);
+- clearInterval(timer);
+- }
+- attempts++;
+- if (attempts > 100) {
+- console.log("Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing")
+- clearInterval(timer);
+- }
+- }, 10, root)
+- }
+- })(window);
+- });
+- };
+- if (document.readyState != "loading") fn();
+- else document.addEventListener("DOMContentLoaded", fn);
+- })();
+- </script>
+- </body>
+-</html>
+\ No newline at end of file
+--- intake.orig/docs/source/community.rst
++++ intake/docs/source/community.rst
+@@ -29,8 +29,6 @@
+
+ .. raw:: html
+
+- <iframe src="https://calendar.google.com/calendar/embed?height=600&wkst=1&bgcolor=%23ffffff&ctz=UTC&src=aW50YWtlLmRldkBnbWFpbC5jb20&color=%23039BE5&showPrint=0&showDate=1&showTitle=1&title=Developer%20Meetings" style="border:solid 1px #777" width="700" height="600" frameborder="0" scrolling="no"></iframe>
+-
+ You can subscribe to this calendar to be notified of changes:
+
+ * `Google Calendar <https://calendar.google.com/calendar/embed?src=intake.dev%40gmail.com>`__
=====================================
debian/patches/fix_tests.patch
=====================================
@@ -1,3 +1,8 @@
+Description: fix failing tests
+ We fix failing unit tests that pybuild runs.
+Author: Shayan Doust <hello at shayandoust.me>
+Last-Update: 2020-06-20
+---
--- intake.orig/intake/conftest.py
+++ intake/intake/conftest.py
@@ -144,7 +144,7 @@
@@ -88,3 +93,4 @@
+#def test_address_flag(address_server):
+# cat = open_catalog(address_server)
+# assert 'use_example1' in list(cat)
+
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
+fix_privacy_breach.patch
fix_tests.patch
View it on GitLab: https://salsa.debian.org/med-team/intake/-/commit/eebdacc7bb54abe190a4634c055a92c8a18501e0
--
View it on GitLab: https://salsa.debian.org/med-team/intake/-/commit/eebdacc7bb54abe190a4634c055a92c8a18501e0
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