[med-svn] [Git][med-team/libpll-2][master] Add copyrights
Shayan Doust
gitlab at salsa.debian.org
Sat Jun 20 19:58:01 BST 2020
Shayan Doust pushed to branch master at Debian Med / libpll-2
Commits:
5d9ad386 by Shayan Doust at 2020-06-20T19:57:45+01:00
Add copyrights
- - - - -
1 changed file:
- debian/copyright
Changes:
=====================================
debian/copyright
=====================================
@@ -1,16 +1,806 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: libpll-2
-Source: <path_to_download>
-Comment: **** Before manually editing this file you should give ****
- scan-copyrights
- **** available in cme + lib-config-model-dpkg-perl ****
- **** package a try. For existing copyright files try ****
- cme update dpkg-copyright
+Source: https://github.com/xflouris/libpll-2/
Files: *
-Copyright: 20xx-20yy <upstream>
-License: <license>
+Copyright: 2015-2017 Tomas Flouri
+License: AGPL-3+
+
+Files: examples/heterotachy/*
+Copyright: 2015 Diego Darriba
+License: AGPL-3+
+
+Files: examples/heterotachy/heterotachy.c
+Copyright: 2015 Diego Darriba, Tomas Flouri
+License: AGPL-3+
+
+Files: examples/lg4/lg4.c
+Copyright: 2015 Tomas Flouri, Diego Darriba
+License: AGPL-3+
+
+Files: examples/newick-fasta-rooted/newick-fasta-rooted.c
+Copyright: 2015 Tomas Flouri, Diego Darriba
+License: AGPL-3+
+
+Files: examples/newick-fasta-unrooted/newick-fasta-unrooted.c
+Copyright: 2015 Tomas Flouri, Diego Darriba
+License: AGPL-3+
+
+Files: examples/partial-traversal/partial.c
+Copyright: 2015 Tomas Flouri, Diego Darriba
+License: AGPL-3+
+
+Files: examples/protein-list/protein-list.c
+Copyright: 2015 Tomas Flouri, Diego Darriba
+License: AGPL-3+
+
+Files: examples/rooted-tacg/rooted-tacg.c
+Copyright: 2015 Tomas Flouri, Diego Darriba
+License: AGPL-3+
+
+Files: m4/*
+Copyright: 2011 Maarten Bosmans <mkbosmans at gmail.com>
+ 2008 Guido U. Draheim <guidod at gmx.de>
+License: GPL-3+
+
+Files: m4/ax_ext.m4
+Copyright: 2013 Michael Petch <mpetch at capp-sysware.com>
+ 2007 Christophe Tournayre <turn3r at users.sourceforge.net>
+License: FSFAP
+
+Files: m4/ax_gcc_x86_avx_xgetbv.m4
+Copyright: 2013 Michael Petch <mpetch at capp-sysware.com>
+License: GPL-3+
+
+Files: m4/ax_gcc_x86_cpuid.m4
+Copyright: 2015 Michael Petch <mpetch at capp-sysware.com>
+ 2008 Steven G. Johnson <stevenj at alum.mit.edu>
+ 2008 Matteo Frigo
+License: GPL-3+
+
+Files: src/core_derivatives.c
+ src/core_derivatives_sse.c
+ src/core_partials.c
+ src/derivatives.c
+ src/likelihood.c
+ src/maps.c
+ src/partials.c
+ src/pll.c
+ src/pll.h
+ src/utree_moves.c
+Copyright: 2015 Tomas Flouri, Diego Darriba
+License: AGPL-3+
+
+Files: src/core_derivatives_avx.c
+ src/core_derivatives_avx2.c
+Copyright: 2016 Tomas Flouri, Diego Darriba, Alexey Kozlov
+License: AGPL-3+
+
+Files: src/core_partials_avx.c
+ src/core_partials_avx2.c
+Copyright: 2016 Tomas Flouri, Kassian Kobert
+License: AGPL-3+
+
+Files: src/gamma.c
+ src/models.c
+Copyright: 2015 Tomas Flouri, Diego Darriba, Alexandros Stamatakis
+License: AGPL-3+
+
+Files: src/random.c
+Copyright: 1983 Regents of the University of California, 1995-2016 Free Software Inc.
+License: LGPL-2.1+
+
+Files: test/*
+Copyright: 2015 Diego Darriba
+License: AGPL-3+
+
+Files: test/src/*
+Copyright: 2015 2016, Diego Darriba, Tomas Flouri
+License: AGPL-3+
+
+Files: test/src/asc-bias.c
+Copyright: 2015 Diego Darriba
+License: AGPL-3+
+
+Files: test/src/pmatrix.c
+ test/src/scaling.c
+Copyright: 2017 Alexey Kozlov, Diego Darriba, Tomas Flouri
+License: AGPL-3+
Files: debian/*
Copyright: 2020 Shayan Doust <hello at shayandoust.me>
-License: <license>
+License: AGPL-3+
+
+License: AGPL-3+
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+ scope of its coverage, prohibits the exercise of, or is conditioned on
+ the non-exercise of one or more of the rights that are specifically
+ granted under this License. You may not convey a covered work if you
+ are a party to an arrangement with a third party that is in the
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+ in connection with copies of the covered work conveyed by you (or
+ copies made from those copies), or (b) primarily for and in connection
+ with specific products or compilations that contain the covered work,
+ unless you entered into that arrangement, or that patent license was
+ granted, prior to 28 March 2007.
+ .
+ Nothing in this License shall be construed as excluding or limiting any
+ implied license or other defenses to infringement that may otherwise be
+ available to you under applicable patent law.
+ .
+ 12. No Surrender of Others' Freedom.
+ .
+ If conditions are imposed on you (whether by court order, agreement or
+ otherwise) that contradict the conditions of this License, they do not
+ excuse you from the conditions of this License. If you cannot convey a
+ covered work so as to satisfy simultaneously your obligations under
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+ you may not convey it at all. For example, if you agree to terms that
+ obligate you to collect a royalty for further conveying from those to
+ whom you convey the Program, the only way you could satisfy both those
+ terms and this License would be to refrain entirely from conveying the
+ Program.
+ .
+ 13. Remote Network Interaction; Use with the GNU General Public
+ License.
+ .
+ Notwithstanding any other provision of this License, if you modify the
+ Program, your modified version must prominently offer all users
+ interacting with it remotely through a computer network (if your
+ version supports such interaction) an opportunity to receive the
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+ Corresponding Source from a network server at no charge, through some
+ standard or customary means of facilitating copying of software. This
+ Corresponding Source shall include the Corresponding Source for any
+ work covered by version 3 of the GNU General Public License that is
+ incorporated pursuant to the following paragraph.
+ .
+ Notwithstanding any other provision of this License, you have
+ permission to link or combine any covered work with a work licensed
+ under version 3 of the GNU General Public License into a single
+ combined work, and to convey the resulting work. The terms of this
+ License will continue to apply to the part which is the covered work,
+ but the work with which it is combined will remain governed by version
+ 3 of the GNU General Public License.
+ .
+ 14. Revised Versions of this License.
+ .
+ The Free Software Foundation may publish revised and/or new versions of
+ the GNU Affero General Public License from time to time. Such new
+ versions will be similar in spirit to the present version, but may
+ differ in detail to address new problems or concerns.
+ .
+ Each version is given a distinguishing version number. If the Program
+ specifies that a certain numbered version of the GNU Affero General
+ Public License "or any later version" applies to it, you have the
+ option of following the terms and conditions either of that numbered
+ version or of any later version published by the Free Software
+ Foundation. If the Program does not specify a version number of the
+ GNU Affero General Public License, you may choose any version ever
+ published by the Free Software Foundation.
+ .
+ If the Program specifies that a proxy can decide which future versions
+ of the GNU Affero General Public License can be used, that proxy's
+ public statement of acceptance of a version permanently authorizes you
+ to choose that version for the Program.
+ .
+ Later license versions may give you additional or different
+ permissions. However, no additional obligations are imposed on any
+ author or copyright holder as a result of your choosing to follow a
+ later version.
+ .
+ 15. Disclaimer of Warranty.
+ .
+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+ APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
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+ ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+ .
+ 16. Limitation of Liability.
+ .
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+ WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR
+ CONVEYS THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+ INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES
+ ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT
+ NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES
+ SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO
+ OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY
+ HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
+ .
+ 17. Interpretation of Sections 15 and 16.
+ .
+ If the disclaimer of warranty and limitation of liability provided
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+ reviewing courts shall apply local law that most closely approximates
+ an absolute waiver of all civil liability in connection with the
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+ copy of the Program in return for a fee.
+ .
+ END OF TERMS AND CONDITIONS
+ .
+ How to Apply These Terms to Your New Programs
+ .
+ If you develop a new program, and you want it to be of the greatest
+ possible use to the public, the best way to achieve this is to make it
+ free software which everyone can redistribute and change under these
+ terms.
+ .
+ To do so, attach the following notices to the program. It is safest to
+ attach them to the start of each source file to most effectively state
+ the exclusion of warranty; and each file should have at least the
+ "copyright" line and a pointer to where the full notice is found.
+ .
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+ .
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Affero General Public License as
+ published by the Free Software Foundation, either version 3 of the
+ License, or (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Affero General Public License for more details.
+ .
+ You should have received a copy of the GNU Affero General Public
+ License along with this program. If not, see
+ <http://www.gnu.org/licenses/>.
+ .
+ Also add information on how to contact you by electronic and paper
+ mail.
+ .
+ If your software can interact with users remotely through a computer
+ network, you should also make sure that it provides a way for users to
+ get its source. For example, if your program is a web application, its
+ interface could display a "Source" link that leads users to an archive
+ of the code. There are many ways you could offer source, and different
+ solutions will be better for different programs; see section 13 for the
+ specific requirements.
+ .
+ You should also get your employer (if you work as a programmer) or
+ school, if any, to sign a "copyright disclaimer" for the program, if
+ necessary. For more information on this, and how to apply and follow
+ the GNU AGPL, see <http://www.gnu.org/licenses/>.
+
+License: FSFAP
+ Copying and distribution of this file, with or without modification, are
+ permitted in any medium without royalty provided the copyright notice and
+ this notice are preserved. This file is offered as-is, without any
+ warranty.
+
+License: GPL-3+
+ The full text of the GPL-3+ license can be found under
+ /usr/share/common-licenses/GPL-3
+
+License: LGPL-2.1+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation; either version 2.1, or (at your option)
+ any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License along
+ with this program; if not, write to the Free Software Foundation,
+ Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+ .
+ On Debian systems, the complete text of the GNU Lesser General Public
+ License version 2.1 can be found in ‘/usr/share/common-licenses/LGPL-2.1’.
View it on GitLab: https://salsa.debian.org/med-team/libpll-2/-/commit/5d9ad386131bfd70f196fae15e843f7ccb78ecbf
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