[med-svn] [Git][med-team/bismark][master] Provide description

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bismark


Commits:
4601499e by Andreas Tille at 2020-06-21T11:38:01+02:00
Provide description

- - - - -


1 changed file:

- debian/control


Changes:

=====================================
debian/control
=====================================
@@ -1,20 +1,32 @@
 Source: bismark
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Liubov Chuprikova <chuprikovalv at gmail.com>
+Section: science
+Priority: optional
 Build-Depends: debhelper (>= 12~)
-Standards-Version: 4.3.0
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/bismark
 Vcs-Git: https://salsa.debian.org/med-team/bismark.git
 Homepage: https://www.bioinformatics.babraham.ac.uk/projects/bismark/
 
 Package: bismark
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends},
-	 perl,
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${perl:Depends},
          samtools,
          bowtie2,
-	 hisat2
-Description: A bisulfite read mapper and methylation caller
- <long_description>
+         hisat2
+Description: bisulfite read mapper and methylation caller
+ Bismark is a program to map bisulfite treated sequencing reads to a
+ genome of interest and perform methylation calls in a single step. The
+ output can be easily imported into a genome viewer, such as SeqMonk, and
+ enables a researcher to analyse the methylation levels of their samples
+ straight away. It's main features are:
+ .
+  * Bisulfite mapping and methylation calling in one single step
+  * Supports single-end and paired-end read alignments
+  * Supports ungapped and gapped alignments
+  * Alignment seed length, number of mismatches etc. are adjustable
+  * Output discriminates between cytosine methylation in CpG, CHG and
+    CHH context



View it on GitLab: https://salsa.debian.org/med-team/bismark/-/commit/4601499e4a3ba29e51e6109aae708ac76fe1e70f

-- 
View it on GitLab: https://salsa.debian.org/med-team/bismark/-/commit/4601499e4a3ba29e51e6109aae708ac76fe1e70f
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