Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b5b0d259 by Andreas Tille at 2020-06-21T13:42:59+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,84 +1,91 @@
-Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
+Last-Update: Sun, 21 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 186 | {imaging,covid-19} |
- orthanc | 92 | {covid-19,practice,imaging} |
- gdcm | 46 | {imaging-dev} |
+ orthanc | 91 | {covid-19,practice,imaging} |
+ gdcm | 48 | {imaging-dev} |
orthanc-wsi | 40 | {covid-19,imaging,laboratory,oncology,practice,his} |
- htsjdk | 33 | {bio-dev} |
+ htsjdk | 34 | {bio-dev} |
dcm2niix | 25 | {imaging} |
- dicomscope | 24 | {imaging} |
+ dicomscope | 25 | {imaging} |
dicom3tools | 23 | {imaging} |
- gdcm | 21 | {covid-19,imaging} |
- gnumed-server | 18 | {covid-19,practice} |
+ gdcm | 22 | {covid-19,imaging} |
ngs-sdk | 18 | {bio-dev} |
+ gnumed-server | 17 | {covid-19,practice} |
+ insighttoolkit4 | 13 | {imaging-dev} |
gdcm | 12 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
invesalius | 12 | {imaging} |
minc-tools | 12 | {imaging} |
adun.app | 11 | {bio} |
jebl2 | 10 | {bio-dev} |
pixelmed | 10 | {imaging} |
plastimatch | 10 | {imaging} |
- vtk-dicom | 10 | {imaging} |
+ psychopy | 10 | {psychology} |
biosig4c++ | 9 | {physics,imaging} |
king | 9 | {typesetting,imaging} |
- psychopy | 9 | {psychology} |
vsearch | 9 | {covid-19,bio} |
+ vtk-dicom | 9 | {imaging} |
dicompyler | 8 | {oncology} |
librg-utils-perl | 8 | {bio} |
melting | 8 | {cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
+ obitools | 8 | {bio} |
openslide | 8 | {imaging} |
fastlink | 7 | {cloud,bio} |
+ king-probe | 7 | {bio} |
ncbi-seg | 7 | {bio} |
- ngs-sdk | 7 | {bio-dev} |
orthanc-webviewer | 7 | {imaging} |
+ seqsero | 7 | {bio} |
biojava-live | 6 | {bio-dev} |
- king-probe | 6 | {bio} |
- obitools | 6 | {bio} |
+ biomaj3-cli | 6 | {cloud} |
+ ea-utils | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
phyutility | 6 | {bio,cloud} |
- piler | 6 | {bio} |
pymia | 6 | {imaging-dev} |
- seqsero | 6 | {bio} |
sibsim4 | 6 | {bio,cloud} |
sigma-align | 6 | {cloud,bio-phylogeny,bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
+ stacks | 6 | {bio} |
staden | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
- biomaj3-cli | 5 | {cloud} |
+ biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
- ea-utils | 5 | {bio} |
ecopcr | 5 | {bio} |
jaligner | 5 | {bio} |
libminc | 5 | {imaging-dev} |
maqview | 5 | {bio} |
+ microbegps | 5 | {bio} |
mipe | 5 | {bio,cloud} |
neobio | 5 | {cloud,bio} |
+ piler | 5 | {bio} |
predictprotein | 5 | {bio} |
+ rambo-k | 5 | {bio} |
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
+ seqmagick | 5 | {covid-19,bio} |
snap-aligner | 5 | {bio} |
squizz | 5 | {bio,cloud} |
- stacks | 5 | {bio} |
+ tnseq-transit | 5 | {bio,covid-19} |
+ transtermhp | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
ampliconnoise | 4 | {bio,cloud} |
anfo | 4 | {bio,cloud} |
arden | 4 | {bio,cloud} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- biomaj3-daemon | 4 | {bio} |
delly | 4 | {covid-19,bio} |
edtsurf | 4 | {bio} |
- elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {bio,cloud} |
embassy-domsearch | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
+ hinge | 4 | {bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lagan | 4 | {bio} |
@@ -87,31 +94,29 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
mhap | 4 | {bio,bio-ngs} |
- microbegps | 4 | {bio} |
mlv-smile | 4 | {cloud,bio} |
mrs | 4 | {bio} |
+ murasaki | 4 | {bio} |
nutsqlite | 4 | {tools} |
openslide | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
+ phast | 4 | {bio} |
placnet | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
probabel | 4 | {bio,cloud} |
pscan-tfbs | 4 | {bio} |
qrisk2 | 4 | {practice} |
- rambo-k | 4 | {bio} |
+ radiant | 4 | {bio} |
rdp-classifier | 4 | {bio} |
rtax | 4 | {bio,cloud} |
- saint | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
sickle | 4 | {bio} |
- tnseq-transit | 4 | {bio,covid-19} |
+ surankco | 4 | {bio} |
tracetuner | 4 | {bio} |
- transtermhp | 4 | {bio} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
bandage | 3 | {bio} |
@@ -129,12 +134,12 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
dazzdb | 3 | {bio} |
dindel | 3 | {bio} |
dwgsim | 3 | {bio} |
+ elastix | 3 | {imaging} |
elph | 3 | {bio} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
harvest-tools | 3 | {bio} |
- hinge | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
lamarc | 3 | {bio} |
libncl | 3 | {bio} |
@@ -142,10 +147,8 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
logol | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mptp | 3 | {bio} |
- murasaki | 3 | {bio} |
nanook | 3 | {bio,covid-19} |
patman | 3 | {bio} |
- phast | 3 | {bio} |
phipack | 3 | {bio} |
phybin | 3 | {bio} |
plasmidseeker | 3 | {bio} |
@@ -154,20 +157,17 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
quorum | 3 | {bio} |
- radiant | 3 | {bio} |
rampler | 3 | {bio} |
relion | 3 | {bio} |
repeatmasker-recon | 3 | {bio} |
roguenarok | 3 | {bio} |
samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
- seqmagick | 3 | {covid-19,bio} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
suitename | 3 | {bio} |
- surankco | 3 | {bio} |
sweed | 3 | {bio} |
tvc | 3 | {bio} |
yaha | 3 | {bio} |
@@ -179,6 +179,7 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
embassy-phylip | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
libsbml | 2 | {bio-dev} |
+ ngs-sdk | 2 | {bio-dev} |
oscar | 2 | {tools,practice,data} |
pal2nal | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
@@ -187,16 +188,20 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
sift | 2 | {bio} |
trace2dbest | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
+ atropos | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
+ cufflinks | 1 | {bio,cloud} |
gatb-core | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmialm | 1 | {imaging-dev} |
libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
+ multiqc | 1 | {bio,covid-19} |
murasaki | 1 | {bio} |
- ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
+ python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
q2templates | 1 | {bio} |
relion | 1 | {bio} |
@@ -205,7 +210,6 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
acedb | 0 | {bio,cloud} |
- atropos | 0 | {bio} |
augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
@@ -213,7 +217,6 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {bio,cloud} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {bio-dev,covid-19} |
@@ -230,7 +233,6 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -251,7 +253,6 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {bio,covid-19} |
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
@@ -260,10 +261,9 @@ Last-Update: Sun, 21 Jun 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- python-py2bit | 0 | {bio,bio-dev} |
quicktree | 0 | {covid-19,bio-phylogeny,bio} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5b0d259015165ba78a08f0bcac5167cf7a0eb7b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5b0d259015165ba78a08f0bcac5167cf7a0eb7b
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200621/61ccadf8/attachment-0001.html>