[med-svn] [Git][med-team/mindthegap][upstream] New upstream version 2.2.2

[Shayan Doust]

Shayan Doust pushed to branch upstream at Debian Med / mindthegap


Commits:
84b0bcd5 by Shayan Doust at 2020-06-21T17:01:10+01:00
New upstream version 2.2.2
- - - - -


30 changed files:

- .gitignore
- CHANGELOG.md
- CMakeLists.txt
- README.md
- + container/Dockerfile
- + container/MTG_recipes
- + container/README.txt
- + data/regions.bed
- + doc/MindTheGap_assembly.md
- + doc/MindTheGap_insertion_caller.md
- + scripts/python3/Context_genome_WG.py
- + scripts/python3/Inser_snp_in_ref.py
- + scripts/python3/README.txt
- + scripts/script_human_analysis/Context_genome_WG.py
- + scripts/script_human_analysis/Inser_snp_in_ref.py
- + scripts/script_human_analysis/README.txt
- src/CircularBuffer.hpp
- src/Filler.cpp
- src/Filler.hpp
- src/FindBreakpoints.hpp
- src/FindHeteroInsertion.hpp
- src/FindInsertion.hpp
- src/FindSNP.hpp
- src/Finder.cpp
- src/Finder.hpp
- src/GraphAnalysis.cpp
- src/GraphAnalysis.hpp
- src/IFindObserver.hpp
- src/main.cpp
- + src/nwAlign/nwalign.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mindthegap/-/commit/84b0bcd5f52ffd2d4ba78712578ead188a457728

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