Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e06bc5a6 by Andreas Tille at 2020-06-22T13:43:36+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,20 +1,20 @@
-Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
+Last-Update: Mon, 22 Jun 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {imaging,covid-19} |
- orthanc | 91 | {covid-19,practice,imaging} |
- gdcm | 48 | {imaging-dev} |
- orthanc-wsi | 40 | {covid-19,imaging,laboratory,oncology,practice,his} |
- htsjdk | 34 | {bio-dev} |
+ dcmtk | 184 | {imaging,covid-19} |
+ orthanc | 93 | {imaging,covid-19,practice} |
+ gdcm | 45 | {imaging-dev} |
+ orthanc-wsi | 41 | {practice,laboratory,covid-19,oncology,his,imaging} |
+ htsjdk | 32 | {bio-dev} |
dcm2niix | 25 | {imaging} |
dicomscope | 25 | {imaging} |
- dicom3tools | 23 | {imaging} |
- gdcm | 22 | {covid-19,imaging} |
- ngs-sdk | 18 | {bio-dev} |
- gnumed-server | 17 | {covid-19,practice} |
- insighttoolkit4 | 13 | {imaging-dev} |
+ dicom3tools | 24 | {imaging} |
+ gdcm | 21 | {covid-19,imaging} |
+ ngs-sdk | 19 | {bio-dev} |
+ gnumed-server | 17 | {practice,covid-19} |
gdcm | 12 | {imaging-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
invesalius | 12 | {imaging} |
minc-tools | 12 | {imaging} |
adun.app | 11 | {bio} |
@@ -22,21 +22,22 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
pixelmed | 10 | {imaging} |
plastimatch | 10 | {imaging} |
psychopy | 10 | {psychology} |
+ vsearch | 10 | {bio,covid-19} |
biosig4c++ | 9 | {physics,imaging} |
- king | 9 | {typesetting,imaging} |
- vsearch | 9 | {covid-19,bio} |
+ dicompyler | 9 | {oncology} |
+ king | 9 | {imaging,typesetting} |
vtk-dicom | 9 | {imaging} |
- dicompyler | 8 | {oncology} |
librg-utils-perl | 8 | {bio} |
- melting | 8 | {cloud,bio} |
+ melting | 8 | {bio,cloud} |
ngs-sdk | 8 | {bio-dev} |
obitools | 8 | {bio} |
openslide | 8 | {imaging} |
- fastlink | 7 | {cloud,bio} |
+ fastlink | 7 | {bio,cloud} |
king-probe | 7 | {bio} |
ncbi-seg | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
seqsero | 7 | {bio} |
+ stacks | 7 | {bio} |
biojava-live | 6 | {bio-dev} |
biomaj3-cli | 6 | {cloud} |
ea-utils | 6 | {bio} |
@@ -44,9 +45,8 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
phyutility | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {cloud,bio-phylogeny,bio} |
+ sigma-align | 6 | {bio,bio-phylogeny,cloud} |
spread-phy | 6 | {bio,bio-phylogeny} |
- stacks | 6 | {bio} |
staden | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
biomaj3-daemon | 5 | {bio} |
@@ -57,7 +57,7 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
maqview | 5 | {bio} |
microbegps | 5 | {bio} |
mipe | 5 | {bio,cloud} |
- neobio | 5 | {cloud,bio} |
+ neobio | 5 | {bio,cloud} |
piler | 5 | {bio} |
predictprotein | 5 | {bio} |
rambo-k | 5 | {bio} |
@@ -65,21 +65,21 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
rdp-readseq | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- seqmagick | 5 | {covid-19,bio} |
+ salmon | 5 | {bio,covid-19} |
+ seqmagick | 5 | {bio,covid-19} |
snap-aligner | 5 | {bio} |
- squizz | 5 | {bio,cloud} |
+ squizz | 5 | {cloud,bio} |
tnseq-transit | 5 | {bio,covid-19} |
transtermhp | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
- ampliconnoise | 4 | {bio,cloud} |
+ ampliconnoise | 4 | {cloud,bio} |
anfo | 4 | {bio,cloud} |
- arden | 4 | {bio,cloud} |
+ arden | 4 | {cloud,bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- delly | 4 | {covid-19,bio} |
+ delly | 4 | {bio,covid-19} |
edtsurf | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
embassy-domalign | 4 | {bio,cloud} |
embassy-domsearch | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
@@ -93,8 +93,8 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio,bio-ngs} |
- mlv-smile | 4 | {cloud,bio} |
+ mhap | 4 | {bio-ngs,bio} |
+ mlv-smile | 4 | {bio,cloud} |
mrs | 4 | {bio} |
murasaki | 4 | {bio} |
nutsqlite | 4 | {tools} |
@@ -105,13 +105,13 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
perm | 4 | {cloud,bio} |
phast | 4 | {bio} |
placnet | 4 | {bio} |
- proalign | 4 | {bio-phylogeny,bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
probabel | 4 | {bio,cloud} |
pscan-tfbs | 4 | {bio} |
qrisk2 | 4 | {practice} |
radiant | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- rtax | 4 | {bio,cloud} |
+ rtax | 4 | {cloud,bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
sickle | 4 | {bio} |
@@ -123,11 +123,11 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
beads | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
bio-rainbow | 3 | {bio} |
- bio-tradis | 3 | {bio-dev,bio} |
+ bio-tradis | 3 | {bio,bio-dev} |
bitseq | 3 | {bio} |
canu | 3 | {bio} |
centrifuge | 3 | {covid-19,bio} |
- clonalframeml | 3 | {bio,covid-19} |
+ clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
daligner | 3 | {bio,bio-ngs} |
dascrubber | 3 | {bio} |
@@ -140,20 +140,20 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
harvest-tools | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
lamarc | 3 | {bio} |
libncl | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
logol | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mptp | 3 | {bio} |
- nanook | 3 | {bio,covid-19} |
+ nanook | 3 | {covid-19,bio} |
patman | 3 | {bio} |
phipack | 3 | {bio} |
phybin | 3 | {bio} |
plasmidseeker | 3 | {bio} |
prime-phylo | 3 | {bio,cloud} |
- prottest | 3 | {bio,bio-phylogeny} |
+ prottest | 3 | {bio-phylogeny,bio} |
pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
quorum | 3 | {bio} |
@@ -161,8 +161,9 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
relion | 3 | {bio} |
repeatmasker-recon | 3 | {bio} |
roguenarok | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
+ samblaster | 3 | {bio,covid-19} |
scrm | 3 | {bio} |
+ sga | 3 | {bio} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
spaced | 3 | {bio} |
@@ -171,16 +172,15 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
sweed | 3 | {bio} |
tvc | 3 | {bio} |
yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
- biosig4c++ | 2 | {physics,imaging-dev} |
- blasr | 2 | {bio-ngs,bio} |
+ zalign | 3 | {bio,cloud} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
+ blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
busco | 2 | {covid-19,bio} |
embassy-phylip | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
libsbml | 2 | {bio-dev} |
- ngs-sdk | 2 | {bio-dev} |
- oscar | 2 | {tools,practice,data} |
+ oscar | 2 | {data,tools,practice} |
pal2nal | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
@@ -191,15 +191,16 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
atropos | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
- cufflinks | 1 | {bio,cloud} |
+ cufflinks | 1 | {cloud,bio} |
gatb-core | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmialm | 1 | {imaging-dev} |
libvistaio | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
- multiqc | 1 | {bio,covid-19} |
+ multiqc | 1 | {covid-19,bio} |
murasaki | 1 | {bio} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
@@ -209,8 +210,8 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
simpleitk | 1 | {imaging-dev} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
- acedb | 0 | {bio,cloud} |
- augur | 0 | {bio,covid-19} |
+ acedb | 0 | {cloud,bio} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -251,9 +252,9 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
- nanosv | 0 | {covid-19,bio} |
+ nanosv | 0 | {bio,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -261,27 +262,27 @@ Last-Update: Mon, 22 Jun 2020 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- quicktree | 0 | {covid-19,bio-phylogeny,bio} |
- relion | 0 | {bio-dev} |
+ quicktree | 0 | {covid-19,bio,bio-phylogeny} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
+ spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
- stringtie | 0 | {covid-19,bio} |
+ stringtie | 0 | {bio,covid-19} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {bio,covid-19} |
- pycoqc | -1 | {bio,covid-19} |
- shovill | -1 | {bio,covid-19} |
- tiddit | -1 | {covid-19,bio} |
-(310 rows)
+ pycoqc | -1 | {covid-19,bio} |
+ shovill | -1 | {covid-19,bio} |
+ tiddit | -1 | {bio,covid-19} |
+(311 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e06bc5a6ee461b2d7f5c09f44aa52b3a0a0a78df
--
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