[med-svn] [Git][med-team/fieldbioinformatics][master] 4 commits: Upload to new

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / fieldbioinformatics


Commits:
8e699457 by Andreas Tille at 2020-06-23T14:10:26+02:00
Upload to new

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06e1c2a8 by Andreas Tille at 2020-06-23T15:12:27+02:00
Shorter synopsis

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42dd4821 by Andreas Tille at 2020-06-23T15:48:51+02:00
Fix DEP5

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b396c4fc by Andreas Tille at 2020-06-23T15:49:08+02:00
Make sure package fieldbioinformatics will not remain empty

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4 changed files:

- debian/changelog
- debian/control
- debian/copyright
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,6 +1,5 @@
-fieldbioinformatics (1.1.3-1) unstable; urgency=medium
+fieldbioinformatics (1.1.3-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #963530)
-  * New upstream release
 
  -- Malihe Asemani <ml.asemani at gmail.com>  Tue, 16 Jun 2020 22:25:27 +0430


=====================================
debian/control
=====================================
@@ -16,7 +16,7 @@ Package: fieldbioinformatics
 Architecture: all
 Depends: ${python3:Depends},
          ${misc:Depends}
-Description: pipeline for working with virus sequencing data sequenced with nanopore
+Description: pipeline  with virus sequencing data sequenced with nanopore
  This is the ARTIC bioinformatics pipeline for working with virus sequencing
  data, sequenced with nanopore. Nanopore is a complete bioinformatics
  protocol to take the output from the sequencing protocol to consensus
@@ -28,7 +28,7 @@ Architecture: all
 Depends: ${python3:Depends},
          ${misc:Depends}
 Enhances: fieldbioinformatics
-Description: pipeline for working with virus sequencing data sequenced with nanopore (examples)
+Description: pipeline for virus sequencing data sequenced with nanopore (examples)
  This is the ARTIC bioinformatics pipeline for working with virus sequencing
  data, sequenced with nanopore. Nanopore is a complete bioinformatics
  protocol to take the output from the sequencing protocol to consensus


=====================================
debian/copyright
=====================================
@@ -8,6 +8,8 @@ License: MIT
 
 Files: debian/*
 Copyright: 2020 Malihe Asemani <ml.asemani at gmail.com>
+License: MIT
+
 License: MIT
  Permission is hereby granted, free of charge, to any person obtaining a copy
  of this software and associated documentation files (the "Software"), to deal
@@ -25,4 +27,4 @@ License: MIT
  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- SOFTWARE.
\ No newline at end of file
+ SOFTWARE.


=====================================
debian/rules
=====================================
@@ -11,6 +11,13 @@ export PYBUILD_NAME=fieldbioinformatics
 %:
 	dh $@ --with python3 --buildsystem=pybuild
 
+override_dh_auto_install:
+	dh_auto_install
+	# FIXME: Hmmmm, no idea why this dirty hack is needed but files are
+	#        installed like into a python3 modules package
+	mv debian/python3-$(PYBUILD_NAME)/* debian/$(PYBUILD_NAME)
+	rmdir debian/python3-$(PYBUILD_NAME)
+
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	echo "Test is downloading extra data and thus can not be running here"



View it on GitLab: https://salsa.debian.org/med-team/fieldbioinformatics/-/compare/ae338338e9c3435fbdbaa8907f9c7cf4eca5267a...b396c4fce7ac9ebbc936bf80bc21181b08fa6710

-- 
View it on GitLab: https://salsa.debian.org/med-team/fieldbioinformatics/-/compare/ae338338e9c3435fbdbaa8907f9c7cf4eca5267a...b396c4fce7ac9ebbc936bf80bc21181b08fa6710
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