[med-svn] [Git][med-team/vg][master] forward patches upstream

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / vg


Commits:
b048884e by Michael R. Crusoe at 2020-06-25T16:49:55+02:00
forward patches upstream

- - - - -


6 changed files:

- debian/patches/crossbuild
- debian/patches/hardening_flags
- debian/patches/parallize_better
- debian/patches/python3
- debian/patches/simde
- debian/patches/spelling


Changes:

=====================================
debian/patches/crossbuild
=====================================
@@ -1,5 +1,14 @@
 From: Michael R. Crusoe <michael.crusoe at gmail.com>
 Subject: Enable cross building
+Forwarded: https://github.com/benedictpaten/sonLib/pull/41
+Forwarded: https://github.com/yoheirosen/sublinear-Li-Stephens/pull/7
+Forwarded: https://github.com/benedictpaten/sonLib/pull/42
+Forwarded: https://github.com/vgteam/cpp_progress_bar/pull/2
+Forwarded: https://github.com/vgteam/libvgio/pull/24
+Forwarded: https://github.com/vgteam/gfakluge/pull/6
+Forwarded: https://github.com/jltsiren/gbwtgraph/pull/8
+Forwarded: https://github.com/vgteam/DYNAMIC/pull/3
+
 --- vg.orig/source_me.sh
 +++ vg/source_me.sh
 @@ -9,8 +9,8 @@


=====================================
debian/patches/hardening_flags
=====================================
@@ -1,5 +1,6 @@
 From: Michael R. Crusoe <michael.crusoe at gmail.com>
 Subject: Make build system more flexible
+Forwarded: https://github.com/vgteam/vg/pull/2864
 
 So that Debian can pass hardening flags
 --- vg.orig/deps/sdsl-lite/install.sh


=====================================
debian/patches/parallize_better
=====================================
@@ -1,5 +1,7 @@
 From: Michael R. Crusoe <michael.crusoe at gmail.com>
 Subject: improve build parallelization
+Forwarded: https://github.com/vgteam/structures/pull/10
+Forwarded: https://github.com/benedictpaten/sonLib/pull/40
 --- vg.orig/deps/sonLib/externalTools/Makefile
 +++ vg/deps/sonLib/externalTools/Makefile
 @@ -8,13 +8,13 @@


=====================================
debian/patches/python3
=====================================
@@ -1,5 +1,8 @@
 From: Michael R. Crusoe <michael.crusoe at gmail.com>
 Subject: convert all Python scripts to Python v3
+Forwarded: https://github.com/vgteam/vg/pull/2865
+Forwarded: https://github.com/vgteam/gfakluge/pull/7
+Forwarded: https://github.com/benedictpaten/sonLib/pull/43
 --- vg.orig/Doxyfile
 +++ vg/Doxyfile
 @@ -863,7 +863,7 @@


=====================================
debian/patches/simde
=====================================
@@ -1,5 +1,10 @@
 Author: Michael R. Crusoe <michael.crusoe at gmail.com>
 Description: Increase portability by using SIMD Everywhere library
+Forwarded: https://github.com/vgteam/gssw/pull/27
+Forwarded: https://github.com/ocxtal/dozeu/pull/2
+Forwarded: https://github.com/vgteam/libbdsg/pull/72
+Forwarded: https://github.com/vgteam/structures/pull/11
+Forwarded: https://github.com/vgteam/vg/pull/2867
 --- vg.orig/deps/dozeu/dozeu.h
 +++ vg/deps/dozeu/dozeu.h
 @@ -44,7 +44,8 @@


=====================================
debian/patches/spelling
=====================================
@@ -1,5 +1,6 @@
 From: Michael R. Crusoe <michael.crusoe at gmail.com>
 Subject: fix spelling typos
+Forwarded: https://github.com/vgteam/vg/pull/2863
 --- vg.orig/src/unittest/aligner.cpp
 +++ vg/src/unittest/aligner.cpp
 @@ -149,7 +149,7 @@



View it on GitLab: https://salsa.debian.org/med-team/vg/-/commit/b048884e3843f507c33840d5583d10f0e7532358

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