[med-svn] [Git][med-team/pomoxis][master] Update Dependencies, missing: https://github.com/shenwei356/seqkit

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pomoxis


Commits:
c1c9c7c3 by Andreas Tille at 2020-06-26T16:44:26+02:00
Update Dependencies, missing: https://github.com/shenwei356/seqkit

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,6 +1,6 @@
 pomoxis (0.3.4-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #<bug>)
-  TODO: Dependency python3-mappy build by minimap2
+  TODO: Dependency https://github.com/shenwei356/seqkit
 
  -- Andreas Tille <tille at debian.org>  Mon, 22 Jun 2020 22:01:48 +0200


=====================================
debian/control
=====================================
@@ -6,7 +6,16 @@ Priority: optional
 Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3,
-               python3-setuptools
+               python3-setuptools,
+               python3-virtualenv,
+               bcftools,
+               bedtools,
+               miniasm,
+               minimap2,
+               racon,
+               samtools,
+# missing               seqkit
+               tabix
 Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/pomoxis
 Vcs-Git: https://salsa.debian.org/med-team/pomoxis.git
@@ -15,7 +24,22 @@ Homepage: https://github.com/nanoporetech/pomoxis
 Package: pomoxis
 Architecture: all
 Depends: ${python3:Depends},
-         ${misc:Depends}
+         ${misc:Depends},
+         python3-biopython,
+         python3-intervaltree,
+         python3-matplotlib,
+         python3-mappy,
+         python3-numpy,
+         python3-pandas,
+         python3-pysam,
+         bcftools,
+         bedtools
+         miniasm,
+         minimap2,
+         porechop,
+         racon,
+# missing               seqkit
+         tabix
 Description: analysis components from Oxford Nanopore Research
  Pomoxis comprises a set of basic bioinformatic tools tailored to
  nanopore sequencing. Notably tools are included for generating and



View it on GitLab: https://salsa.debian.org/med-team/pomoxis/-/commit/c1c9c7c3b63c74938c35da8d2f33d7f303edae0b

-- 
View it on GitLab: https://salsa.debian.org/med-team/pomoxis/-/commit/c1c9c7c3b63c74938c35da8d2f33d7f303edae0b
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