[med-svn] [Git][med-team/quicktree][master] 3 commits: Really build libquicktree-dev

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / quicktree


Commits:
18e8463b by Andreas Tille at 2020-06-26T20:21:27+02:00
Really build libquicktree-dev

- - - - -
36239d79 by Andreas Tille at 2020-06-26T20:24:44+02:00
DEP3

- - - - -
18c266f6 by Andreas Tille at 2020-06-26T20:28:16+02:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/patches/create_lib.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,10 @@
-quicktree (2.5-3) UNRELEASED; urgency=medium
+quicktree (2.5-3) unstable; urgency=medium
 
+  * Team upload.
   * To enable removing quicktree source code copy from libsonlib package
     a static library is created here
-  FIXME: The above is deactivated.  Libsonlib and signalalign need more
-         care first before we go this hackish route
 
- -- Andreas Tille <tille at debian.org>  Tue, 16 Jun 2020 09:35:08 +0200
+ -- Andreas Tille <tille at debian.org>  Fri, 26 Jun 2020 20:21:40 +0200
 
 quicktree (2.5-2) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -31,26 +31,25 @@ Description: Neighbor-Joining algorithm for phylogenies
  The tress are written to stdout, in the Newick/New-Hampshire format
  use by PHYLIP and many other programs
 
-#FIXME: This is needed for libsonlib as predependency of signalalign - but things need to be clarified first
-#Package: libquicktree-dev
-#Architecture: any
-#Section: libdevel
-#Depends: ${shlibs:Depends},
-#         ${misc:Depends}
-#Description: Neighbor-Joining algorithm for phylogenies (development)
-# QuickTree is an efficient implementation of the Neighbor-Joining
-# algorithm (PMID: 3447015), capable of reconstructing phylogenies from
-# huge alignments in time less than the age of the universe.
-# .
-# QuickTree accepts both distance matrix and multiple-sequence-aligment
-# inputs. The former should be in PHYLIP format. The latter should be
-# in Stockholm format, which is the native alignment format for the Pfam
-# database. Alignments in various formats can be converted to Stockholm
-# format with the sreformat program, which is part of the HMMer package
-# (hmmer.org).
-# .
-# The tress are written to stdout, in the Newick/New-Hampshire format
-# use by PHYLIP and many other programs
-# .
-# This package contains some header files from quicktree that are used
-# by other packages.
+Package: libquicktree-dev
+Architecture: any
+Section: libdevel
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: Neighbor-Joining algorithm for phylogenies (development)
+ QuickTree is an efficient implementation of the Neighbor-Joining
+ algorithm (PMID: 3447015), capable of reconstructing phylogenies from
+ huge alignments in time less than the age of the universe.
+ .
+ QuickTree accepts both distance matrix and multiple-sequence-aligment
+ inputs. The former should be in PHYLIP format. The latter should be
+ in Stockholm format, which is the native alignment format for the Pfam
+ database. Alignments in various formats can be converted to Stockholm
+ format with the sreformat program, which is part of the HMMer package
+ (hmmer.org).
+ .
+ The tress are written to stdout, in the Newick/New-Hampshire format
+ use by PHYLIP and many other programs
+ .
+ This package contains some header files from quicktree that are used
+ by other packages.


=====================================
debian/patches/create_lib.patch
=====================================
@@ -1,3 +1,7 @@
+Author: Andreas Tille
+Last-Update: 2020-06-16 14:17:27 +0200
+Description: Create static library
+
 --- a/Makefile
 +++ b/Makefile
 @@ -10,6 +10,13 @@ COMMON = $(OBJ)/align.o \



View it on GitLab: https://salsa.debian.org/med-team/quicktree/-/compare/a3fc7a1c9133243d494b7485d4e01e4bcbb1045a...18c266f60d25e827ca54bcc14faef7caaec85da9

-- 
View it on GitLab: https://salsa.debian.org/med-team/quicktree/-/compare/a3fc7a1c9133243d494b7485d4e01e4bcbb1045a...18c266f60d25e827ca54bcc14faef7caaec85da9
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