Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
365f992e by Andreas Tille at 2020-06-28T13:42:59+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,198 +1,194 @@
-Last-Update: Sun, 28 Jun 2020 01:42:04 +0000
+Last-Update: Sun, 28 Jun 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19} |
- orthanc | 93 | {imaging,covid-19,practice} |
- gdcm | 47 | {imaging-dev} |
- orthanc-wsi | 42 | {practice,laboratory,covid-19,oncology,his,imaging} |
+ dcmtk | 182 | {imaging,covid-19} |
+ orthanc | 94 | {imaging,covid-19,practice} |
+ gdcm | 45 | {imaging-dev} |
+ orthanc-wsi | 43 | {practice,laboratory,covid-19,oncology,his,imaging} |
htsjdk | 36 | {bio-dev} |
dcm2niix | 25 | {imaging} |
- dicom3tools | 23 | {imaging} |
+ dicom3tools | 24 | {imaging} |
dicomscope | 23 | {imaging} |
gdcm | 20 | {covid-19,imaging} |
ngs-sdk | 20 | {bio-dev} |
- gnumed-server | 16 | {practice,covid-19} |
- gdcm | 13 | {imaging-dev} |
+ gnumed-server | 17 | {practice,covid-19} |
+ minc-tools | 13 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
invesalius | 12 | {imaging} |
jebl2 | 12 | {bio-dev} |
- minc-tools | 12 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
+ adun.app | 11 | {bio} |
pixelmed | 11 | {imaging} |
- adun.app | 10 | {bio} |
+ melting | 10 | {bio,cloud} |
plastimatch | 10 | {imaging} |
biosig4c++ | 9 | {physics,imaging} |
dicompyler | 9 | {oncology} |
openslide | 9 | {imaging} |
psychopy | 9 | {psychology} |
+ stacks | 9 | {bio} |
vtk-dicom | 9 | {imaging} |
+ fastlink | 8 | {bio,cloud} |
king | 8 | {imaging,typesetting} |
+ lagan | 8 | {bio} |
librg-utils-perl | 8 | {bio} |
- melting | 8 | {bio,cloud} |
ngs-sdk | 8 | {bio-dev} |
obitools | 8 | {bio} |
- stacks | 8 | {bio} |
+ seqsero | 8 | {bio} |
+ treeview | 8 | {bio,bio-phylogeny} |
+ biojava-live | 7 | {bio-dev} |
ea-utils | 7 | {bio} |
- fastlink | 7 | {bio,cloud} |
+ jaligner | 7 | {bio} |
king-probe | 7 | {bio} |
- lagan | 7 | {bio} |
+ maqview | 7 | {bio} |
ncbi-seg | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- seqsero | 7 | {bio} |
- treeview | 7 | {bio,bio-phylogeny} |
- biojava-live | 6 | {bio-dev} |
+ phyutility | 7 | {bio,cloud} |
+ sibsim4 | 7 | {bio,cloud} |
+ sigma-align | 7 | {bio,bio-phylogeny,cloud} |
+ spread-phy | 7 | {bio,bio-phylogeny} |
+ staden | 7 | {bio} |
+ anfo | 6 | {bio,cloud} |
biomaj3-cli | 6 | {cloud} |
- jaligner | 6 | {bio} |
+ ecopcr | 6 | {bio} |
+ ghmm | 6 | {bio} |
libdivsufsort | 6 | {bio-dev} |
- maqview | 6 | {bio} |
+ libminc | 6 | {imaging-dev} |
+ microbegps | 6 | {bio} |
+ mipe | 6 | {bio,cloud} |
+ mlv-smile | 6 | {bio,cloud} |
+ neobio | 6 | {bio,cloud} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
- phyutility | 6 | {bio,cloud} |
- sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {bio,bio-phylogeny,cloud} |
- spread-phy | 6 | {bio,bio-phylogeny} |
- staden | 6 | {bio} |
- anfo | 5 | {bio,cloud} |
+ paraclu | 6 | {bio,cloud} |
+ piler | 6 | {bio} |
+ rdp-alignment | 6 | {bio} |
+ rdp-readseq | 6 | {bio} |
+ runcircos-gui | 6 | {bio} |
+ snap-aligner | 6 | {bio} |
+ squizz | 6 | {cloud,bio} |
+ tnseq-transit | 6 | {bio,covid-19} |
+ transtermhp | 6 | {bio} |
+ alter-sequence-alignment | 5 | {bio} |
+ ampliconnoise | 5 | {cloud,bio} |
biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
- ecopcr | 5 | {bio} |
+ delly | 5 | {bio,covid-19} |
+ edtsurf | 5 | {bio} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {bio,cloud} |
+ gatb-core | 5 | {bio} |
getdata | 5 | {bio} |
- ghmm | 5 | {bio} |
- libminc | 5 | {imaging-dev} |
+ ipig | 5 | {bio} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ maffilter | 5 | {bio} |
+ mauve-aligner | 5 | {bio} |
mhap | 5 | {bio-ngs,bio} |
- microbegps | 5 | {bio} |
- mipe | 5 | {bio,cloud} |
- mlv-smile | 5 | {bio,cloud} |
- neobio | 5 | {bio,cloud} |
orthanc-mysql | 5 | {imaging} |
- paraclu | 5 | {bio,cloud} |
- piler | 5 | {bio} |
+ perm | 5 | {cloud,bio} |
+ placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
+ proalign | 5 | {bio,bio-phylogeny} |
+ probabel | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
rambo-k | 5 | {bio} |
- rdp-alignment | 5 | {bio} |
- rdp-readseq | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
saint | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
+ scythe | 5 | {bio} |
+ segemehl | 5 | {bio} |
seqmagick | 5 | {bio,covid-19} |
- sickle | 5 | {bio} |
- snap-aligner | 5 | {bio} |
- squizz | 5 | {cloud,bio} |
- tnseq-transit | 5 | {bio,covid-19} |
- transtermhp | 5 | {bio} |
- alter-sequence-alignment | 4 | {bio} |
- ampliconnoise | 4 | {cloud,bio} |
+ tracetuner | 5 | {bio} |
+ zalign | 5 | {bio,cloud} |
arden | 4 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
+ baitfisher | 4 | {bio} |
+ bandage | 4 | {bio} |
bart-view | 4 | {imaging} |
+ beast2-mcmc | 4 | {bio} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- delly | 4 | {bio,covid-19} |
- edtsurf | 4 | {bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
- embassy-domalign | 4 | {bio,cloud} |
- embassy-domsearch | 4 | {bio,cloud} |
- gatb-core | 4 | {bio} |
+ bio-rainbow | 4 | {bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ bitseq | 4 | {bio} |
+ canu | 4 | {bio} |
+ centrifuge | 4 | {covid-19,bio} |
+ clonalframeml | 4 | {covid-19,bio} |
+ clonalorigin | 4 | {bio} |
+ daligner | 4 | {bio,bio-ngs} |
+ dascrubber | 4 | {bio} |
+ dazzdb | 4 | {bio} |
+ dindel | 4 | {bio} |
+ dwgsim | 4 | {bio} |
+ elph | 4 | {bio} |
+ estscan | 4 | {bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ harvest-tools | 4 | {bio} |
hinge | 4 | {bio} |
- ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- maffilter | 4 | {bio} |
- mauve-aligner | 4 | {bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
+ lamarc | 4 | {bio} |
+ libncl | 4 | {bio} |
+ libpal-java | 4 | {bio-dev} |
+ metaphlan2 | 4 | {bio} |
+ mptp | 4 | {bio} |
mrs | 4 | {bio} |
murasaki | 4 | {bio} |
nutsqlite | 4 | {tools} |
orthanc-postgresql | 4 | {imaging} |
pal2nal | 4 | {bio} |
- perm | 4 | {cloud,bio} |
+ patman | 4 | {bio} |
phast | 4 | {bio} |
- placnet | 4 | {bio} |
- proalign | 4 | {bio,bio-phylogeny} |
- probabel | 4 | {bio,cloud} |
+ phybin | 4 | {bio} |
+ prime-phylo | 4 | {bio,cloud} |
+ prottest | 4 | {bio-phylogeny,bio} |
+ pscan-chip | 4 | {bio} |
pscan-tfbs | 4 | {bio} |
+ qcumber | 4 | {bio} |
qrisk2 | 4 | {practice} |
+ quorum | 4 | {bio} |
radiant | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- scythe | 4 | {bio} |
- segemehl | 4 | {bio} |
+ rampler | 4 | {bio} |
+ relion | 4 | {bio} |
+ repeatmasker-recon | 4 | {bio} |
+ roguenarok | 4 | {bio} |
+ rtax | 4 | {cloud,bio} |
+ samblaster | 4 | {bio,covid-19} |
+ scrm | 4 | {bio} |
+ sga | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ soapsnp | 4 | {bio} |
+ spaced | 4 | {bio} |
+ sprai | 4 | {bio} |
+ suitename | 4 | {bio} |
surankco | 4 | {bio} |
- tracetuner | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
- assemblytics | 3 | {bio} |
- baitfisher | 3 | {bio} |
- bandage | 3 | {bio} |
- beads | 3 | {bio} |
- beast2-mcmc | 3 | {bio} |
- bio-rainbow | 3 | {bio} |
- bio-tradis | 3 | {bio,bio-dev} |
- bitseq | 3 | {bio} |
- canu | 3 | {bio} |
- centrifuge | 3 | {covid-19,bio} |
- clonalframeml | 3 | {covid-19,bio} |
- clonalorigin | 3 | {bio} |
- daligner | 3 | {bio,bio-ngs} |
- dascrubber | 3 | {bio} |
- dazzdb | 3 | {bio} |
- dindel | 3 | {bio} |
- dwgsim | 3 | {bio} |
+ sweed | 4 | {bio} |
+ tvc | 4 | {bio} |
+ yaha | 4 | {bio} |
+ blasr | 3 | {bio,bio-ngs} |
elastix | 3 | {imaging} |
- elph | 3 | {bio} |
- estscan | 3 | {bio} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
- harvest-tools | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
- lamarc | 3 | {bio} |
- libncl | 3 | {bio} |
- libpal-java | 3 | {bio-dev} |
logol | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
- mptp | 3 | {bio} |
multiqc | 3 | {covid-19,bio} |
nanook | 3 | {covid-19,bio} |
ngs-sdk | 3 | {bio-dev} |
- openslide | 3 | {imaging-dev} |
- patman | 3 | {bio} |
+ pbdagcon | 3 | {bio} |
phipack | 3 | {bio} |
- phybin | 3 | {bio} |
plasmidseeker | 3 | {bio} |
- prime-phylo | 3 | {bio,cloud} |
- prottest | 3 | {bio-phylogeny,bio} |
- pscan-chip | 3 | {bio} |
- qcumber | 3 | {bio} |
- quorum | 3 | {bio} |
- rampler | 3 | {bio} |
- relion | 3 | {bio} |
- repeatmasker-recon | 3 | {bio} |
- roguenarok | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- samblaster | 3 | {bio,covid-19} |
- scrm | 3 | {bio} |
- sga | 3 | {bio} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
- spaced | 3 | {bio} |
- sprai | 3 | {bio} |
- suitename | 3 | {bio} |
- sweed | 3 | {bio} |
- tvc | 3 | {bio} |
- yaha | 3 | {bio} |
+ velvetoptimiser | 3 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
- blasr | 2 | {bio,bio-ngs} |
- blimps | 2 | {bio} |
busco | 2 | {covid-19,bio} |
embassy-phylip | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
libctapimkt | 2 | {practice} |
libsbml | 2 | {bio-dev} |
ncbi-vdb | 2 | {bio-dev} |
+ openslide | 2 | {imaging-dev} |
oscar | 2 | {data,tools,practice} |
- pbdagcon | 2 | {bio} |
relion | 2 | {bio} |
- sift | 2 | {bio} |
trace2dbest | 2 | {bio} |
- velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
+ blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
- ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
@@ -211,6 +207,7 @@ Last-Update: Sun, 28 Jun 2020 01:42:04 +0000
relion | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
+ sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
thesias | 1 | {covid-19,bio} |
tiddit | 1 | {bio,covid-19} |
@@ -223,6 +220,7 @@ Last-Update: Sun, 28 Jun 2020 01:42:04 +0000
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
+ ctn | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
kma | 0 | {bio} |
@@ -256,6 +254,7 @@ Last-Update: Sun, 28 Jun 2020 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
+ mssstest | 0 | {tools} |
nanosv | 0 | {bio,covid-19} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -263,8 +262,8 @@ Last-Update: Sun, 28 Jun 2020 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
quicktree | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -280,9 +279,8 @@ Last-Update: Sun, 28 Jun 2020 01:42:04 +0000
vtk-dicom | 0 | {imaging-dev} |
augur | -1 | {covid-19,bio} |
bustools | -1 | {bio,covid-19} |
- mssstest | -1 | {tools} |
pycoqc | -1 | {covid-19,bio} |
shovill | -1 | {covid-19,bio} |
yanagiba | -1 | {covid-19,bio} |
-(311 rows)
+(309 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/365f992eb1dd6ab7564fc95be7af1b02d9edfc02
--
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