[med-svn] [Git][med-team/tiddit][master] Fix tests

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / tiddit


Commits:
c4a6394c by Nilesh Patra at 2020-06-28T14:07:17+00:00
Fix tests

- - - - -


1 changed file:

- debian/tests/run-unit-test


Changes:

=====================================
debian/tests/run-unit-test
=====================================
@@ -17,12 +17,10 @@ cat normal.sam | samtools view -Sb - > normal.bam
 cat tumor.sam | samtools view -Sb - > tumor.bam
 
 echo 'Test 1'
-TIDDIT.py --sv --p_ratio 0.10 --bam tumor.bam -o tumor --ref ref.fa
-cat tumor.pass.vcf
+TIDDIT.py --sv --p_ratio 0.10 --bam tumor.bam -o test1 --ref ref.fa
 echo 'PASS'
 
 echo 'Test 2'
-TIDDIT.py --sv --bam normal.bam -o normal --ref ref.fa
-cat normal.pass.vcf
+TIDDIT.py --sv --bam normal.bam -o test2 --ref ref.fa
 echo 'PASS'
 



View it on GitLab: https://salsa.debian.org/med-team/tiddit/-/commit/c4a6394cc9783aaf8f8dbbd39055cee2d5256946

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View it on GitLab: https://salsa.debian.org/med-team/tiddit/-/commit/c4a6394cc9783aaf8f8dbbd39055cee2d5256946
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