Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e2889099 by Andreas Tille at 2020-06-29T13:45:53+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,203 +1,202 @@
-Last-Update: Mon, 29 Jun 2020 01:42:03 +0000
+Last-Update: Mon, 29 Jun 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {imaging,covid-19} |
- orthanc | 94 | {imaging,covid-19,practice} |
+ dcmtk | 181 | {covid-19,imaging} |
+ orthanc | 94 | {covid-19,imaging,practice} |
gdcm | 45 | {imaging-dev} |
- orthanc-wsi | 43 | {practice,laboratory,covid-19,oncology,his,imaging} |
+ orthanc-wsi | 45 | {his,practice,covid-19,laboratory,imaging,oncology} |
htsjdk | 36 | {bio-dev} |
- dcm2niix | 25 | {imaging} |
- dicom3tools | 24 | {imaging} |
- dicomscope | 23 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
- ngs-sdk | 20 | {bio-dev} |
- gnumed-server | 17 | {practice,covid-19} |
- minc-tools | 13 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ dicomscope | 21 | {imaging} |
+ dicom3tools | 19 | {imaging} |
+ ngs-sdk | 19 | {bio-dev} |
+ gnumed-server | 18 | {practice,covid-19} |
+ gdcm | 17 | {covid-19,imaging} |
gdcm | 12 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
- invesalius | 12 | {imaging} |
- jebl2 | 12 | {bio-dev} |
- adun.app | 11 | {bio} |
- pixelmed | 11 | {imaging} |
- melting | 10 | {bio,cloud} |
- plastimatch | 10 | {imaging} |
- biosig4c++ | 9 | {physics,imaging} |
- dicompyler | 9 | {oncology} |
+ insighttoolkit4 | 11 | {imaging-dev} |
+ invesalius | 11 | {imaging} |
+ jebl2 | 11 | {bio-dev} |
+ minc-tools | 10 | {imaging} |
+ adun.app | 9 | {bio} |
+ king | 9 | {imaging,typesetting} |
+ melting | 9 | {bio,cloud} |
openslide | 9 | {imaging} |
+ pixelmed | 9 | {imaging} |
psychopy | 9 | {psychology} |
- stacks | 9 | {bio} |
- vtk-dicom | 9 | {imaging} |
- fastlink | 8 | {bio,cloud} |
- king | 8 | {imaging,typesetting} |
lagan | 8 | {bio} |
- librg-utils-perl | 8 | {bio} |
ngs-sdk | 8 | {bio-dev} |
obitools | 8 | {bio} |
- seqsero | 8 | {bio} |
- treeview | 8 | {bio,bio-phylogeny} |
- biojava-live | 7 | {bio-dev} |
- ea-utils | 7 | {bio} |
- jaligner | 7 | {bio} |
- king-probe | 7 | {bio} |
+ stacks | 8 | {bio} |
+ biosig4c++ | 7 | {physics,imaging} |
+ dicompyler | 7 | {oncology} |
+ fastlink | 7 | {cloud,bio} |
+ libdivsufsort | 7 | {bio-dev} |
+ libminc | 7 | {imaging-dev} |
+ librg-utils-perl | 7 | {bio} |
maqview | 7 | {bio} |
- ncbi-seg | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- phyutility | 7 | {bio,cloud} |
- sibsim4 | 7 | {bio,cloud} |
- sigma-align | 7 | {bio,bio-phylogeny,cloud} |
- spread-phy | 7 | {bio,bio-phylogeny} |
- staden | 7 | {bio} |
+ plastimatch | 7 | {imaging} |
+ pymia | 7 | {imaging-dev} |
+ seqsero | 7 | {bio} |
+ treeview | 7 | {bio-phylogeny,bio} |
+ vtk-dicom | 7 | {imaging} |
anfo | 6 | {bio,cloud} |
- biomaj3-cli | 6 | {cloud} |
- ecopcr | 6 | {bio} |
- ghmm | 6 | {bio} |
- libdivsufsort | 6 | {bio-dev} |
- libminc | 6 | {imaging-dev} |
- microbegps | 6 | {bio} |
- mipe | 6 | {bio,cloud} |
+ biojava-live | 6 | {bio-dev} |
+ ea-utils | 6 | {bio} |
+ jaligner | 6 | {bio} |
+ king-probe | 6 | {bio} |
mlv-smile | 6 | {bio,cloud} |
- neobio | 6 | {bio,cloud} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
- paraclu | 6 | {bio,cloud} |
- piler | 6 | {bio} |
- rdp-alignment | 6 | {bio} |
- rdp-readseq | 6 | {bio} |
- runcircos-gui | 6 | {bio} |
- snap-aligner | 6 | {bio} |
- squizz | 6 | {cloud,bio} |
- tnseq-transit | 6 | {bio,covid-19} |
- transtermhp | 6 | {bio} |
- alter-sequence-alignment | 5 | {bio} |
- ampliconnoise | 5 | {cloud,bio} |
- biomaj3-daemon | 5 | {bio} |
- brig | 5 | {bio} |
- delly | 5 | {bio,covid-19} |
- edtsurf | 5 | {bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domalign | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {bio,cloud} |
- gatb-core | 5 | {bio} |
- getdata | 5 | {bio} |
- ipig | 5 | {bio} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
- maffilter | 5 | {bio} |
- mauve-aligner | 5 | {bio} |
- mhap | 5 | {bio-ngs,bio} |
+ ncbi-seg | 6 | {bio} |
+ orthanc-dicomweb | 6 | {imaging,covid-19} |
+ paraclu | 6 | {cloud,bio} |
+ sibsim4 | 6 | {bio,cloud} |
+ sigma-align | 6 | {bio-phylogeny,cloud,bio} |
+ staden | 6 | {bio} |
+ biomaj3-cli | 5 | {cloud} |
+ ecopcr | 5 | {bio} |
+ ghmm | 5 | {bio} |
+ microbegps | 5 | {bio} |
+ mipe | 5 | {cloud,bio} |
+ neobio | 5 | {cloud,bio} |
orthanc-mysql | 5 | {imaging} |
- perm | 5 | {cloud,bio} |
- placnet | 5 | {bio} |
- predictprotein | 5 | {bio} |
- proalign | 5 | {bio,bio-phylogeny} |
- probabel | 5 | {bio,cloud} |
- pymia | 5 | {imaging-dev} |
- rambo-k | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
- saint | 5 | {bio} |
- salmon | 5 | {bio,covid-19} |
- scythe | 5 | {bio} |
- segemehl | 5 | {bio} |
- seqmagick | 5 | {bio,covid-19} |
- tracetuner | 5 | {bio} |
- zalign | 5 | {bio,cloud} |
- arden | 4 | {cloud,bio} |
- assemblytics | 4 | {bio} |
- baitfisher | 4 | {bio} |
+ phyutility | 5 | {bio,cloud} |
+ piler | 5 | {bio} |
+ rdp-alignment | 5 | {bio} |
+ rdp-readseq | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ snap-aligner | 5 | {bio} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ squizz | 5 | {bio,cloud} |
+ tnseq-transit | 5 | {covid-19,bio} |
+ transtermhp | 5 | {bio} |
+ zalign | 5 | {cloud,bio} |
+ alter-sequence-alignment | 4 | {bio} |
+ ampliconnoise | 4 | {cloud,bio} |
bandage | 4 | {bio} |
bart-view | 4 | {imaging} |
- beast2-mcmc | 4 | {bio} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- bio-rainbow | 4 | {bio} |
- bio-tradis | 4 | {bio,bio-dev} |
- bitseq | 4 | {bio} |
- canu | 4 | {bio} |
- centrifuge | 4 | {covid-19,bio} |
- clonalframeml | 4 | {covid-19,bio} |
- clonalorigin | 4 | {bio} |
- daligner | 4 | {bio,bio-ngs} |
- dascrubber | 4 | {bio} |
- dazzdb | 4 | {bio} |
- dindel | 4 | {bio} |
- dwgsim | 4 | {bio} |
- elph | 4 | {bio} |
- estscan | 4 | {bio} |
- fastml | 4 | {bio} |
- fsm-lite | 4 | {bio} |
- harvest-tools | 4 | {bio} |
- hinge | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
- lamarc | 4 | {bio} |
- libncl | 4 | {bio} |
- libpal-java | 4 | {bio-dev} |
- metaphlan2 | 4 | {bio} |
- mptp | 4 | {bio} |
+ biomaj3-daemon | 4 | {bio} |
+ brig | 4 | {bio} |
+ delly | 4 | {bio,covid-19} |
+ edtsurf | 4 | {bio} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
+ gatb-core | 4 | {bio} |
+ getdata | 4 | {bio} |
+ ipig | 4 | {bio} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ maffilter | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
+ mhap | 4 | {bio-ngs,bio} |
mrs | 4 | {bio} |
- murasaki | 4 | {bio} |
- nutsqlite | 4 | {tools} |
orthanc-postgresql | 4 | {imaging} |
pal2nal | 4 | {bio} |
- patman | 4 | {bio} |
- phast | 4 | {bio} |
- phybin | 4 | {bio} |
- prime-phylo | 4 | {bio,cloud} |
- prottest | 4 | {bio-phylogeny,bio} |
- pscan-chip | 4 | {bio} |
- pscan-tfbs | 4 | {bio} |
- qcumber | 4 | {bio} |
- qrisk2 | 4 | {practice} |
- quorum | 4 | {bio} |
- radiant | 4 | {bio} |
- rampler | 4 | {bio} |
+ perm | 4 | {cloud,bio} |
+ placnet | 4 | {bio} |
+ predictprotein | 4 | {bio} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ probabel | 4 | {cloud,bio} |
+ rambo-k | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
- repeatmasker-recon | 4 | {bio} |
- roguenarok | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
- samblaster | 4 | {bio,covid-19} |
- scrm | 4 | {bio} |
- sga | 4 | {bio} |
- soapaligner | 4 | {bio} |
- soapsnp | 4 | {bio} |
- spaced | 4 | {bio} |
- sprai | 4 | {bio} |
- suitename | 4 | {bio} |
- surankco | 4 | {bio} |
- sweed | 4 | {bio} |
- tvc | 4 | {bio} |
- yaha | 4 | {bio} |
- blasr | 3 | {bio,bio-ngs} |
- elastix | 3 | {imaging} |
- logol | 3 | {bio} |
- multiqc | 3 | {covid-19,bio} |
- nanook | 3 | {covid-19,bio} |
+ saint | 4 | {bio} |
+ salmon | 4 | {bio,covid-19} |
+ scythe | 4 | {bio} |
+ segemehl | 4 | {bio} |
+ seqmagick | 4 | {covid-19,bio} |
+ tracetuner | 4 | {bio} |
+ arden | 3 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
+ baitfisher | 3 | {bio} |
+ beast2-mcmc | 3 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ bio-rainbow | 3 | {bio} |
+ bio-tradis | 3 | {bio-dev,bio} |
+ bitseq | 3 | {bio} |
+ canu | 3 | {bio} |
+ centrifuge | 3 | {bio,covid-19} |
+ clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
+ daligner | 3 | {bio-ngs,bio} |
+ dascrubber | 3 | {bio} |
+ dazzdb | 3 | {bio} |
+ dindel | 3 | {bio} |
+ dwgsim | 3 | {bio} |
+ elph | 3 | {bio} |
+ estscan | 3 | {bio} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ harvest-tools | 3 | {bio} |
+ hinge | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
+ lamarc | 3 | {bio} |
+ libncl | 3 | {bio} |
+ libpal-java | 3 | {bio-dev} |
+ metaphlan2 | 3 | {bio} |
+ mptp | 3 | {bio} |
+ multiqc | 3 | {bio,covid-19} |
+ murasaki | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
- pbdagcon | 3 | {bio} |
- phipack | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
- velvetoptimiser | 3 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
+ nutsqlite | 3 | {tools} |
+ openslide | 3 | {imaging-dev} |
+ patman | 3 | {bio} |
+ phast | 3 | {bio} |
+ phybin | 3 | {bio} |
+ prime-phylo | 3 | {bio,cloud} |
+ prottest | 3 | {bio-phylogeny,bio} |
+ pscan-chip | 3 | {bio} |
+ pscan-tfbs | 3 | {bio} |
+ qcumber | 3 | {bio} |
+ qrisk2 | 3 | {practice} |
+ quorum | 3 | {bio} |
+ radiant | 3 | {bio} |
+ rampler | 3 | {bio} |
+ repeatmasker-recon | 3 | {bio} |
+ roguenarok | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
+ samblaster | 3 | {covid-19,bio} |
+ scrm | 3 | {bio} |
+ sga | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
+ suitename | 3 | {bio} |
+ surankco | 3 | {bio} |
+ sweed | 3 | {bio} |
+ tvc | 3 | {bio} |
+ yaha | 3 | {bio} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
+ blasr | 2 | {bio,bio-ngs} |
busco | 2 | {covid-19,bio} |
- embassy-phylip | 2 | {cloud,bio} |
- emboss-explorer | 2 | {bio} |
+ elastix | 2 | {imaging} |
+ embassy-phylip | 2 | {bio,cloud} |
libctapimkt | 2 | {practice} |
- libsbml | 2 | {bio-dev} |
+ libvistaio | 2 | {imaging-dev} |
+ logol | 2 | {bio} |
+ nanook | 2 | {bio,covid-19} |
ncbi-vdb | 2 | {bio-dev} |
- openslide | 2 | {imaging-dev} |
- oscar | 2 | {data,tools,practice} |
- relion | 2 | {bio} |
- trace2dbest | 2 | {bio} |
+ oscar | 2 | {practice,tools,data} |
+ pbdagcon | 2 | {bio} |
+ phipack | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
+ samtools-legacy | 2 | {bio-dev} |
+ seqan | 2 | {bio-dev} |
+ velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
blimps | 1 | {bio} |
- cat-bat | 1 | {covid-19,bio} |
+ cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {cloud,bio} |
+ emboss-explorer | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- htscodecs | 1 | {bio-dev,covid-19} |
+ htscodecs | 1 | {covid-19,bio-dev} |
libchado-perl | 1 | {bio-dev} |
libmaus2 | 1 | {covid-19,bio-dev} |
libmialm | 1 | {imaging-dev} |
- libvistaio | 1 | {imaging-dev} |
+ libsbml | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
- murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
@@ -205,12 +204,10 @@ Last-Update: Mon, 29 Jun 2020 01:42:03 +0000
python-scitrack | 1 | {covid-19} |
q2templates | 1 | {bio} |
relion | 1 | {bio} |
- samtools-legacy | 1 | {bio-dev} |
- seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- thesias | 1 | {covid-19,bio} |
- tiddit | 1 | {bio,covid-19} |
+ thesias | 1 | {bio,covid-19} |
+ trace2dbest | 1 | {bio} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
acedb | 0 | {cloud,bio} |
@@ -255,32 +252,33 @@ Last-Update: Mon, 29 Jun 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
+ murasaki | 0 | {bio} |
nanosv | 0 | {bio,covid-19} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- quicktree | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio-dev} |
+ quicktree | 0 | {bio,covid-19,bio-phylogeny} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
- spaln | 0 | {covid-19,bio} |
+ spaln | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
stringtie | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
augur | -1 | {covid-19,bio} |
bustools | -1 | {bio,covid-19} |
pycoqc | -1 | {covid-19,bio} |
- shovill | -1 | {covid-19,bio} |
- yanagiba | -1 | {covid-19,bio} |
-(309 rows)
+ shovill | -1 | {bio,covid-19} |
+ yanagiba | -1 | {bio,covid-19} |
+(307 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e2889099cad39ad1a89100106f31a994ceb498fb
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