[med-svn] [Git][med-team/elph][master] 5 commits: compat version: 13

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / elph


Commits:
8d548ed7 by Nilesh Patra at 2020-06-30T20:40:29+05:30
compat version: 13

- - - - -
ff815ba9 by Nilesh Patra at 2020-06-30T20:40:56+05:30
Add "Rules-Requires-Root:no"

- - - - -
b1e0a93d by Nilesh Patra at 2020-06-30T20:41:40+05:30
Add autopkgtests

- - - - -
acf81fba by Nilesh Patra at 2020-06-30T20:44:47+05:30
Add salsa-ci.yml

- - - - -
538dcca1 by Nilesh Patra at 2020-06-30T20:47:03+05:30
Bump standards version to 4.5.0

- - - - -


4 changed files:

- debian/control
- + debian/salsa-ci.yml
- + debian/tests/control
- + debian/tests/run-unit-test


Changes:

=====================================
debian/control
=====================================
@@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Steffen Moeller <moeller at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                help2man
-Standards-Version: 4.4.1
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/elph
 Vcs-Git: https://salsa.debian.org/med-team/elph.git
 Homepage: https://www.cbcb.umd.edu/software/ELPH/
+Rules-Requires-Root: no
 
 Package: elph
 Architecture: any


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,4 @@
+Tests: run-unit-test
+Depends: @, igor
+Restrictions: allow-stderr
+


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,25 @@
+#!/bin/bash
+set -e
+
+pkg=elph
+PACKAGE=igor
+
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp /usr/share/doc/${PACKAGE}/examples/* -a "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+gunzip -r *
+
+echo 'Test 1'
+elph genomicVs_with_primers.fasta genomicDs.fasta LEN=5 -s974 -n3
+echo '================================'
+echo
+
+echo 'Test 2'
+elph genomicJs_all_curated.fasta LEN=2 -p15 -b
+echo '================================'
+echo 'PASS'



View it on GitLab: https://salsa.debian.org/med-team/elph/-/compare/6935777d35a91aaf8327bb68278e859fab3c12ed...538dcca162e7df9baa57ee586d4156b7abf2fbe1

-- 
View it on GitLab: https://salsa.debian.org/med-team/elph/-/compare/6935777d35a91aaf8327bb68278e859fab3c12ed...538dcca162e7df9baa57ee586d4156b7abf2fbe1
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