[med-svn] [Git][med-team/bbmap][upstream] New upstream version 38.86+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / bbmap


Commits:
f4fc1067 by Andreas Tille at 2020-06-30T22:01:40+02:00
New upstream version 38.86+dfsg
- - - - -


22 changed files:

- README.md
- applyvariants.sh
- + bitbucket-pipelines.yml
- + build.xml
- callvariants.sh
- + current/aligner/FlatAligner2.java
- current/assemble/Tadpole1.java
- current/consensus/BaseGraph.java
- + current/hmm/HMMSearchLine.java
- + current/hmm/HMMSearchReport.java
- current/icecream/IceCreamFinder.java
- current/icecream/IceCreamMaker.java
- + current/icecream/PBHeader.java
- + current/icecream/ReformatPacBio.java
- + current/icecream/ZMW.java
- + current/icecream/ZMWStreamer.java
- + current/jasper/KmerPosition.java
- + current/jasper/KmerPosition3.java
- current/jgi/BBDuk.java
- current/jgi/RandomGenome.java
- current/jgi/ReformatReads.java
- current/shared/Shared.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/f4fc10675fbc3fed0232edc98940c7a40452d4fc

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/f4fc10675fbc3fed0232edc98940c7a40452d4fc
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