Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c7c00725 by Andreas Tille at 2020-03-01T13:44:14+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,31 +1,31 @@
-Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
+Last-Update: Sun, 01 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
dcmtk | 172 | {imaging} |
orthanc | 95 | {practice,imaging} |
- gdcm | 47 | {imaging-dev} |
+ gdcm | 46 | {imaging-dev} |
orthanc-wsi | 37 | {oncology,imaging,his,laboratory,practice} |
dcm2niix | 36 | {imaging} |
cfflib | 35 | {imaging-dev} |
- amide | 33 | {imaging} |
+ amide | 32 | {imaging} |
dicomscope | 26 | {imaging} |
- medicalterms | 25 | {tools} |
+ medicalterms | 26 | {tools} |
dicom3tools | 23 | {imaging} |
htsjdk | 22 | {bio-dev} |
gdcm | 17 | {imaging} |
gnumed-server | 17 | {practice} |
ngs-sdk | 13 | {bio-dev} |
adun.app | 12 | {bio} |
- minc-tools | 12 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
pixelmed | 12 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
invesalius | 11 | {imaging} |
king | 11 | {imaging,typesetting} |
+ minc-tools | 11 | {imaging} |
+ plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
jebl2 | 9 | {bio-dev} |
mia | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
tree-puzzle | 9 | {bio,bio-phylogeny,cloud} |
biojava-live | 8 | {bio-dev} |
gdcm | 8 | {imaging-dev} |
@@ -46,7 +46,6 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
ngs-sdk | 6 | {bio-dev} |
norsp | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
- staden | 6 | {bio} |
dazzdb | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
estscan | 5 | {bio} |
@@ -62,6 +61,7 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
sibsim4 | 5 | {cloud,bio} |
sigma-align | 5 | {bio-phylogeny,bio,cloud} |
sortmerna | 5 | {bio} |
+ staden | 5 | {bio} |
ampliconnoise | 4 | {bio,cloud} |
anfo | 4 | {bio,cloud} |
biomaj3-cli | 4 | {cloud} |
@@ -102,7 +102,6 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
beast2-mcmc | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
bio-tradis | 3 | {bio-dev,bio} |
- blasr | 3 | {bio,bio-ngs} |
bppsuite | 3 | {bio} |
canu | 3 | {bio} |
codonw | 3 | {bio} |
@@ -133,7 +132,6 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
quorum | 3 | {bio} |
rdp-alignment | 3 | {bio} |
rdp-readseq | 3 | {bio} |
- repeatmasker-recon | 3 | {bio} |
saint | 3 | {bio} |
salmon | 3 | {bio} |
seer | 3 | {bio} |
@@ -153,6 +151,7 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
beast-mcmc | 2 | {bio,bio-phylogeny} |
bio-rainbow | 2 | {bio} |
bitseq | 2 | {bio} |
+ blasr | 2 | {bio,bio-ngs} |
centrifuge | 2 | {bio} |
clonalframeml | 2 | {bio} |
clonalorigin | 2 | {bio} |
@@ -184,6 +183,7 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
rampler | 2 | {bio} |
rdp-classifier | 2 | {bio} |
relion | 2 | {bio} |
+ repeatmasker-recon | 2 | {bio} |
rtax | 2 | {cloud,bio} |
samblaster | 2 | {bio} |
scythe | 2 | {bio} |
@@ -241,6 +241,7 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
suitename | 1 | {bio} |
sumaclust | 1 | {bio} |
surankco | 1 | {bio} |
+ thesias | 1 | {bio} |
tnseq-transit | 1 | {bio} |
tree-puzzle | 1 | {bio,cloud,bio-phylogeny} |
varscan | 1 | {bio} |
@@ -254,7 +255,6 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
fasta3 | 0 | {bio} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
- freemedforms-project | 0 | {data} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -304,8 +304,8 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
python-py2bit | 0 | {bio,bio-dev} |
python-pyani | 0 | {bio-dev} |
python-tinyalign | 0 | {bio-dev,bio} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -314,9 +314,8 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
smrtanalysis | 0 | {bio} |
solvate | 0 | {bio} |
spaln | 0 | {bio} |
- thesias | 0 | {bio} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
-(348 rows)
+(345 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
+Last-Update: Sun, 01 Mar 2020 13:42:03 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -66,7 +66,10 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200227.663a4d9 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
+ q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00
q2-feature-classifier | 2019.4.0 | 2019.10.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
+ q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
+ qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
resfinder-db | 0.0+git20191001.149209d | 0.0+git20200213.2a8dd7f | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
@@ -81,7 +84,7 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(79 rows)
+(82 rows)
source | id | severity | title
@@ -279,11 +282,10 @@ Last-Update: Sun, 01 Mar 2020 01:42:04 +0000
tree-puzzle | 890790 | minor | tree-puzzle: Please provide autopkgtest
tree-puzzle | 951984 | serious | tree-puzzle: FTBFS: mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead."
treeviewx | 846481 | minor | src:treeviewx: Please remove statically linked code copy of libncl
- tvc | 945720 | normal | tvc: Python2 removal in sid/bullseye
unanimity | 938751 | serious | unanimity: Python2 removal in sid/bullseye
unanimity | 939506 | serious | unanimity ftbfs in unstable
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(199 rows)
+(198 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c7c007256022bacaf40f23a804e03175909655ed
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c7c007256022bacaf40f23a804e03175909655ed
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200301/ccf3fa54/attachment-0001.html>