[med-svn] [Git][med-team/salmon][master] 11 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / salmon


Commits:
1790a8d0 by Michael R. Crusoe at 2020-02-28T17:04:25+01:00
routine-update: New upstream version

- - - - -
ac6af4db by Michael R. Crusoe at 2020-02-28T17:04:26+01:00
New upstream version 1.1.0+ds1
- - - - -
583fa145 by Michael R. Crusoe at 2020-02-28T17:04:28+01:00
Update upstream source from tag 'upstream/1.1.0+ds1'

Update to upstream version '1.1.0+ds1'
with Debian dir e6ab141cd48a21d2d2845b979ad3095402918b61
- - - - -
d2550c75 by Michael R. Crusoe at 2020-02-28T17:04:29+01:00
routine-update: Standards-Version: 4.5.0

- - - - -
9ef9d1de by Michael R. Crusoe at 2020-02-28T17:04:32+01:00
routine-update: Secure URI in copyright format

- - - - -
11a153f9 by Michael R. Crusoe at 2020-02-28T17:14:20+01:00
routine-update: DEB_BUILD_OPTIONS allow override_dh_auto_test

- - - - -
e05a6dd3 by Michael R. Crusoe at 2020-02-28T17:14:21+01:00
Remove duplicate line from changelog.
- - - - -
a19cff41 by Michael R. Crusoe at 2020-02-28T17:14:24+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit.
- - - - -
eda7afaf by Michael R. Crusoe at 2020-02-28T17:23:53+01:00
update citation metadata

- - - - -
e69fb156 by Michael R. Crusoe at 2020-03-01T11:52:54+01:00
fix test

- - - - -
c16438d6 by Michael R. Crusoe at 2020-03-01T15:49:45+01:00
clean up changelog

- - - - -


30 changed files:

- CMakeLists.txt
- README.md
- cmake/SimpleTest.cmake
- current_version.txt
- debian/changelog
- debian/control
- debian/copyright
- debian/rules
- debian/upstream/metadata
- doc/source/alevin.rst
- doc/source/conf.py
- doc/steps_to_prepare_release.md
- docker/Dockerfile
- docker/build_test.sh
- include/AlevinHash.hpp
- include/AlevinOpts.hpp
- include/AlevinUtils.hpp
- include/BarcodeModel.hpp
- include/CollapsedCellOptimizer.hpp
- include/DedupUMI.hpp
- − include/Filter.hpp
- include/GZipWriter.hpp
- include/ReadExperiment.hpp
- include/SalmonConfig.hpp
- include/SalmonDefaults.hpp
- include/SalmonIndex.hpp
- include/SalmonMappingUtils.hpp
- include/SalmonOpts.hpp
- scripts/fetchPufferfish.sh
- src/Alevin.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/3bf53443e79788e7791c68bb50353e12877d9ae4...c16438d6adeb9aa0089a826bdab5d0d4ea26d71e

-- 
View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/3bf53443e79788e7791c68bb50353e12877d9ae4...c16438d6adeb9aa0089a826bdab5d0d4ea26d71e
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200301/ce93f4a1/attachment.html>